Gene Sama_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0080 
Symbol 
ID4602337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp87909 
End bp89147 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content60% 
IMG OID639779392 
Productimidazolonepropionase 
Protein accessionYP_925962 
Protein GI119773222 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1228] Imidazolonepropionase and related amidohydrolases 
TIGRFAM ID[TIGR01224] imidazolonepropionase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTGGG ATCAGGTTTG GATTGATATC AATATTGCCA CCATGGACCC ATCCATGAAC 
GAGGCTTATG GCGCCATTAC CGATGCGGCG CTGGCGGTAA AAGACGGCAA AATAGCCTGG
CTTGGCAAGC GCAGCGACCT GCCCGAATTC GATGTGCTGG CCACCCCTGT ACACCGCGGC
CATGGCGGCT GGCTGACCCC CGGCCTGATT GATGCCCACA CTCACCTGGT ATTTGCCGGT
AATCGCGCCA ACGAATTTGA GCTGCGTCTG CAGGGCGCAA GCTACGAAGA AATCGCCCGC
GCCGGCGGCG GCATTGTCAG CACAGTAAAA GCCTGCCGCG ACGCCGACGA AGCCGAGCTG
TTTGACCTCG CCCGTCGCCG CCTGAATGCG TTGGCAAAGG AAGGGGTTAC CACGGTGGAA
ATCAAATCAG GCTACGGCCT GGATTTGGAT ACCGAGCTTA AGCTACTGCG GGTTGCCCGC
GAGCTTGGCC AGCACCACCA CGTGGATGTA GTCACCACCT TCCTCGGTGC CCATGCCGTG
CCCCCTGAGT TCAAAACCCT GGGCGAAGCC GGAACCGATG CCTATGTGGA TCTGGTGGTC
AACGAAATGC TGCCCGCCGT GGTGGCCGAG AACCTTGCCG ATGCCGCCGA CGTATTCTGC
GAAAACATCG CCTTTAACCT AGAGCAAACC GAGCGGGTTC TGAGCGCCGC CAAAACTTTG
GGGCTGGATA TCAAGCTGCA CGCCGAGCAG CTCAGCAACC TCGGAGGCAG TGAACTGGCC
GCGCGTCTTG GCGCCAAGTC GGTTGACCAT ATCGAATACC TCGACGAAGC CGGCGTAAAG
GCCATTGCCC AAAGCGGCAC CTGCGCCGTG CTGTTGCCGG GCGCCTTCTA CTTCCTGCGG
GAAACCAAGC TGCCTCCCAT CGACCTTTTG CGTCAGTATC AGGTGCCCAT GGTGCTTGCC
AGCGATTTTA ACCCCGGTTC ATCACCTATC TGCTCGACCC TGCTGATGCT GAACATGGGC
TGCACCCTGT TCCGTCTGAC GCCGGAAGAG GCCCTTGCCG GCGTAACCCG TAACGCCGCC
CGCGCCCTTG GCCGTGACCA GCGCGTGGGC GTGTTACGTG AAGGTATGGA GGCCGACTTC
TGCCTGTGGC GTATCTCCAC CCCGGCGGAG CTGGCATACT CCTATGGCGT AAATCCACTG
GTGGATGTGG TGAAAGGTGG CAGGCTAATT CATCAATAA
 
Protein sequence
MSWDQVWIDI NIATMDPSMN EAYGAITDAA LAVKDGKIAW LGKRSDLPEF DVLATPVHRG 
HGGWLTPGLI DAHTHLVFAG NRANEFELRL QGASYEEIAR AGGGIVSTVK ACRDADEAEL
FDLARRRLNA LAKEGVTTVE IKSGYGLDLD TELKLLRVAR ELGQHHHVDV VTTFLGAHAV
PPEFKTLGEA GTDAYVDLVV NEMLPAVVAE NLADAADVFC ENIAFNLEQT ERVLSAAKTL
GLDIKLHAEQ LSNLGGSELA ARLGAKSVDH IEYLDEAGVK AIAQSGTCAV LLPGAFYFLR
ETKLPPIDLL RQYQVPMVLA SDFNPGSSPI CSTLLMLNMG CTLFRLTPEE ALAGVTRNAA
RALGRDQRVG VLREGMEADF CLWRISTPAE LAYSYGVNPL VDVVKGGRLI HQ