Gene Sama_0077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0077 
Symbol 
ID4602334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp82839 
End bp84014 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content58% 
IMG OID639779389 
ProductMerR family transcriptional regulator 
Protein accessionYP_925959 
Protein GI119773219 
COG category[K] Transcription
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0789] Predicted transcriptional regulators
[COG2230] Cyclopropane fatty acid synthase and related methyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTGC GTATTTCACA ACTGGCACAA AAGTTCGGAT TATCGCGATC GACCCTGCTG 
TATTACGAGA AACAGGGGCT TATCCGCGGC AGACGATTGG ATAACGGCTA TCGGGTATAC
AGCGAAAATG ACCTGCAGCG ACTGATCTTG ATCCAAAAGC TGCAGGCGGG CGGTCTCACC
TTAAAAGAGT GCCTGGCCTG CCTCGATGCA CGCATTGACA AAGCGCTGCT GCAAACCCGG
CTTGCCGAGC TGGACGCCGA CATTGCCCAA AAGCAGGCTT CGCGGACTTT GCTGGCAGCC
CTTCTGGGCG AAGGCGATTT GAAGGCGTGG CACGAGTCCC TCACAAAGGA AGCGCCCGAG
GCGCATCTGG ATTGGTTACA AACCCAGGGC TTCAGCGAAA AAGAAGCGCT GCACCTGACA
TGGCTATCTA AAGATATGAA CGAACACGAC AAATTTATGG CCGACTTTAT GCAGATTTTC
TCCCCGCTGA CACGCTGGGC GCCGGGCAGC GAGGCCGACA CCTTAAAAGC GCTGGCATCC
GTGCCGCTGA CGCCAACACG GATTCTCGAC ATAGGCTGCG GCAAAGGCCT TGCGACCCGA
ATGCTGGCGA AGCACACGAA AGCCAGCATC ACCGCCATCG ATAACGAGGA AGACGCCCTC
ACTGAGCTGC AACAGCACCT TCAGCACCGC AATCTGGCCA GCCGGGTCAG CACCCTGTGC
GCCAGCATGA CGGACATACC ACTACCGGCG GCGAGCGCCG ATCTTATTTG GGCCGAAGGC
AGCGCTTATA TCATGGGGGT CGAGCAGGCG CTCAAGTCAT GGCGTAAGTT GCTGGTCGAT
AACGGCGTGC TGGTCCTCAG CGATCTGGTG TGGCTGACAG ACGACAAAGC ACCTGAGGCC
GTGGCCTTCT GGCAGCAGGA CTACCCCGCC ATGACCTCAG TCGAGGCGAG AATGGCGCAA
ATGCAGGCGG CGGGTTTTGA GGTTATTGAC AGCTTCAGCC TCAGTAATGA GGCCTGGAAG
AGCTTTACCG GCCCACTGGC AGCGCGGGTG GATGAGGTTT CAGAGCAGCT GGCAGGCTCG
CAGGCGTTAG CCAATGTGCA GCGGGAGCTT GGTATTTTCA GCCGCTTCCT CGGCCAGTTT
GGCTATCAGT TCTTCGTGCT GCAAAAACGG GGTTAA
 
Protein sequence
MTLRISQLAQ KFGLSRSTLL YYEKQGLIRG RRLDNGYRVY SENDLQRLIL IQKLQAGGLT 
LKECLACLDA RIDKALLQTR LAELDADIAQ KQASRTLLAA LLGEGDLKAW HESLTKEAPE
AHLDWLQTQG FSEKEALHLT WLSKDMNEHD KFMADFMQIF SPLTRWAPGS EADTLKALAS
VPLTPTRILD IGCGKGLATR MLAKHTKASI TAIDNEEDAL TELQQHLQHR NLASRVSTLC
ASMTDIPLPA ASADLIWAEG SAYIMGVEQA LKSWRKLLVD NGVLVLSDLV WLTDDKAPEA
VAFWQQDYPA MTSVEARMAQ MQAAGFEVID SFSLSNEAWK SFTGPLAARV DEVSEQLAGS
QALANVQREL GIFSRFLGQF GYQFFVLQKR G