| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0067 |
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| Symbol | |
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| ID | 4602324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 72794 |
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| End bp | 75859 |
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| Gene Length | 3066 bp |
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| Protein Length | 1021 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779379 |
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| Product | signal transduction histidine kinase-like protein protein |
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| Protein accession | YP_925949 |
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| Protein GI | 119773209 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTGGC TTGGCGGCGG CAAGAGTTTG GGTTACAAGC TGAATATGGC TACGGCGTTA
CTTGCCATAG GCGTGTGTTT GCTGGTGGGA CTCTATTATC AAAACGATGT CAGTGAACGA
ATTCGGGACG TTGCGCGACA CGAGATGGCC GACTTGGTCA ATAGTCTTAA TCTGGCGCTT
GAAACCAAAG CCAATCGCAG CGATGTGCAG CGTGTAATGG GAGCGTTATC AACCAAGGAG
TCCATTCGCC GTATCAGTCT CATCGAAGGC GAAAAAATTA CCGCCGATAA TCACGCTCAA
CATATTGGCC GCACAGTGGC CGAAAGTTTT GGCAGCCAGG TTCAACAACT CATCCGTAAC
ACTCGCACCA AAAACAGCGA CGATCCCTTT TTGGAAAAAG ACGGTGTAAT CCACCAAACA
GCACTCCTGT ACCTTATCTC CCCCGAGCGT CAGCGACTGA GACCGTTTGT GCTTTATGTT
GCTTATGATC CCGCCGCCCT TGAACAGGCC GCGCAAAAGG GATTTATGGA GTTCATCCTG
ATCCAGTCGT TGGGCTTTAT GTTGTTGCTG TTCATCAACA CCCTGGTGCA ACAGAAGGTA
GTACTCGGGC CCATTAATGC CATTCGGCGT CAGATAGAGG CCGATCCCCA ATCGGAACTT
GCGCTCAAAG CCGACGATGA GTTGGGCCTG CTGGTTGAAA GCTACAATGC CTCAATTCGT
CAGCGCATAA TGCAGGCCAA AGAGCTGGAG GATTCGCGCC GTTACATAGA CACAGTCATT
AATGTTATTC CGGTCCAACT GGCGTATGTG GATGCCTCAC GCTGCTACCG TTTTATCAAT
CGTCGTTATT TGGTTTGGCT GGGCAAAAGT GAAGCTGAGG TTTTGGGCCG CTCAGTGACA
GACGTGTTGC CCCCACCGGT CGAAGAGTTG ATAGTGCCTT ATCAATTGAG AGCGCTGCAG
GGGAATCAGC AAGTATTCGA TGCCGAGTTT GACGACAAAT ACTTTCAGGC AACCTATGTT
CCGGATGTGA CCAATGATGG CGAAGTGGTG GGATTTTTTG CCTGTGTGGA AGACCTGACG
CCCATCAAAG CCAACGAGCG TAAAATTGAA TCTTATGCGT TGGAGTTGGA GCATAAAAAC
GCCGATTTAG TCGAGGCACG GGAAAAAGCC GAGGCGGCAT CCAGGATCAA AGCGGATTTT
CTCGCGTGCA TGAGCCATGA AATACGCACA CCCATGAATG GCGTGCTTGG TATCCTCTCT
TTGCTGGAGA AAACCGAGCT GTCGATTCAG CAAAAACATT ATTTGGATGT GGCTTCTACC
AGCGCCGAAT CGTTACTGAC CCTGCTCAAC GATATTCTCG ACTTTTCCAA GATCGAATCA
GGTAAGTTTG AAATTGATGA GGTGCCATTC GATCTTATTC AGTTACTGGA TGACTTTATC
CAGCCCTTTG CGATTCGGGC CGAAGCCAAA GGGTTGAAGC TGTTGCTGGA CATTTCCGGT
ATCCATCTGC GTTGGGTGCG AGGTGACCCC GGCAGGATCA GACAGGTGTT GGTCAATTTG
GTGAGTAATG CCATTAAGTT TACTGAGGTC GGCTGGATAG CCGTGCGGGT GCAGGCGTCT
GAAGATACTG CAAACGGCGT GTCACTGATG GTGAGTATTG AAGACACGGG GATTGGGATA
TCCAAGGACA AGCAGGAAGT ACTGTTCTCG CCCTTTACCC AAGCCGACTC TACGACTACC
CGCCATTTCG GTGGTACCGG ACTTGGGCTT TCAATTGCCA AACGTTTGTG TGAACTCATG
GATGGCGATA TTCGGGTCAT CAGTGCTGAA GATGCCGGCA GTACCTTCAA GTTCCATTTA
CGGCTTAAGT CCGAGGCGGC TTCAGGTGCC GAGTGGCCGC CTGCGCTGAA TTGCCGCGCA
CCTTTGCTCG CGGGCGAGCT TGGTGCTTCT GAGCGAATGT TGTTCGAATT ACTCGATTCA
TGGCAGTTAA GGCCAGCACT TCTGGAATCC AATACGGAGT TGGCACAAAC GCCGGCGCTG
GCGGCTGCGG ATTGGCTCAT TTATTCGGTA CCAGAGCACC TGGTGTCTAT CACACAAGAG
CTGCAAAAGA TGGCGGCATT CGCCACCGAA AAAGGGCTTA AGTTTTTAGC CATCATTTCC
CACAGACAAC AGATTGGATT GGCCCCCACA ATCTTAAGCA GTTGCCACTA TCTGTGTCGG
CCTATGCAGG CACTTAAGCT GGTGGACATA TTAAGCGATA GTGATGGCAA CGACGTGGTG
TTGCCGGATG ACACACAAAG CCAGCTCAAC GATTCAGCCC AGATACTGCT GGTGGAAGAT
AATAAGGTGA ATCAGATGGT CGCTCTGGGC ATGCTCAGAA ACCTTGGGCT TAAGCATGTG
GAAGTGGTCA CCAACGGTTT GCAGGCACTT GCGGCACTGC AACATCGGCA ATACGACCTT
ATTTTGATGG ATTGCCTGAT GCCGGAAATG GATGGCTATC AGGCCACCCA AGCAATTAGA
AAAGGTGAGG CTGGACAGAA ACATAAAGAT ATCAAAATCG TCGCTATGAC AGCCAATGCC
ATGAAAGGCG ACCGGGAAAC CTGCCTTGAG GCAGGTATGA ATGATTATAT CGCCAAGCCA
CTACACCAAG CGGAGGTTGC CAGGGTGCTC GAGCGCTATA TTCCCCTCGA CAGCACATCC
TGTGCACCGT CAAACCCTTT GTCGGCAGAC ACCTTATTGT TTGACCGTCA CTGTGCCCTT
GAGCTGATGT CTGGTGATAG CGAGCTGCTG GGTGATATCC TCAAGGTGTT TGCCGAAGAA
ATGGCCGTGT ATCTCGAGGC GTTTGAGAGC GCCATGGGCC GCAGGGACTT CGCAGCGGTG
CGCACTGCCG TACACGCCAT CAAGGGGGCT GCGGGCAATC TGTGTATGTC GCCGTTGGCC
GGGGTCGCCA AAGAAATGGA AATGGCCGCC CGCCGCCTGG ATTGGGTGTA CCTGGAGGCG
CATCAGGCGG AATTTATCGA CGTATTACGA CGTACACTGG AACAAAGCCA ATTGCCGACA
GCATAA
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| Protein sequence | MKWLGGGKSL GYKLNMATAL LAIGVCLLVG LYYQNDVSER IRDVARHEMA DLVNSLNLAL
ETKANRSDVQ RVMGALSTKE SIRRISLIEG EKITADNHAQ HIGRTVAESF GSQVQQLIRN
TRTKNSDDPF LEKDGVIHQT ALLYLISPER QRLRPFVLYV AYDPAALEQA AQKGFMEFIL
IQSLGFMLLL FINTLVQQKV VLGPINAIRR QIEADPQSEL ALKADDELGL LVESYNASIR
QRIMQAKELE DSRRYIDTVI NVIPVQLAYV DASRCYRFIN RRYLVWLGKS EAEVLGRSVT
DVLPPPVEEL IVPYQLRALQ GNQQVFDAEF DDKYFQATYV PDVTNDGEVV GFFACVEDLT
PIKANERKIE SYALELEHKN ADLVEAREKA EAASRIKADF LACMSHEIRT PMNGVLGILS
LLEKTELSIQ QKHYLDVAST SAESLLTLLN DILDFSKIES GKFEIDEVPF DLIQLLDDFI
QPFAIRAEAK GLKLLLDISG IHLRWVRGDP GRIRQVLVNL VSNAIKFTEV GWIAVRVQAS
EDTANGVSLM VSIEDTGIGI SKDKQEVLFS PFTQADSTTT RHFGGTGLGL SIAKRLCELM
DGDIRVISAE DAGSTFKFHL RLKSEAASGA EWPPALNCRA PLLAGELGAS ERMLFELLDS
WQLRPALLES NTELAQTPAL AAADWLIYSV PEHLVSITQE LQKMAAFATE KGLKFLAIIS
HRQQIGLAPT ILSSCHYLCR PMQALKLVDI LSDSDGNDVV LPDDTQSQLN DSAQILLVED
NKVNQMVALG MLRNLGLKHV EVVTNGLQAL AALQHRQYDL ILMDCLMPEM DGYQATQAIR
KGEAGQKHKD IKIVAMTANA MKGDRETCLE AGMNDYIAKP LHQAEVARVL ERYIPLDSTS
CAPSNPLSAD TLLFDRHCAL ELMSGDSELL GDILKVFAEE MAVYLEAFES AMGRRDFAAV
RTAVHAIKGA AGNLCMSPLA GVAKEMEMAA RRLDWVYLEA HQAEFIDVLR RTLEQSQLPT
A
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