| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0044 |
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| Symbol | |
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| ID | 4602301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 47757 |
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| End bp | 48797 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779353 |
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| Product | LysM domain-containing protein |
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| Protein accession | YP_925926 |
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| Protein GI | 119773186 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.764087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.149636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATA CCCTGACGCT TAAGCCAGGC CATCCGGACA CCTACGTCGT CGTGAAAGGG
GATACCCTCT GGGATATTTC TGCGAAGTTT TTAAACGACC CCTGGCGTTG GCCAAAGCTT
TGGAATGCCA ACCCACAAAT TGCCAATCCC CATTTGATTT ACCCCGGGGA TCGTCTGACA
TTGGTCTTTA TCGATGGTCA GCCGCGTTTG GTGGTCAAGC CTCAGGTTCG TAAGAGCCCT
GAAGGGCGGG TCATGCCAAA AGGTGGAGCC ATTCCAGCGG TGAATCTGGA ACTTATCCAG
CCTTATTTGA GCCAAAATCG AGTGGTTGAC GATGACTGGT TTGCACAGCA GCCCATGATT
CTTGGTGGCG AGAGTCCATC ACGTTTCCAT ATCGAGAGTG ATGTGATTTA TGTGCAGGCA
GAGCTGCCCG TTGGTATGAA GGTGGCTGCT TATGATGTTG GCCGGATCTT TACCGATAAA
ACCACCGAAG AGACACTGGG CCGTGAAGTT ATCCTGACGG CGAGTGGCCG TGTGGTTGAG
TCTGGCCCCA TTTCCAAAAT CCAAATCAGC ACCAACCTGC GTGAAACCCG TCCAGGTAAT
CGCGTGCTGC CCATCGAAGA TGAAGCCTTG ATGTCAGCAT ACTTTATGCC CAAGCCTGCC
GATGTCACCG ATGCCTATGT GATTGGTACC GAAAAAGACA TTCGCGAAGT GGGTAAACTG
GATGTGGTGT ACATCAGCAA GGGCGAGAGC GACGGGGTTG AGCCCGGCGA TGTGTTTGCC
ATTCATCGCG ACGGTGAAAC CGTGGTCATT AATAAAGAGG GTACACCTGT CCCAAGTATA
GATCGCAGTG CCTACGGTGA TCTGATGGCC ACCTTTGGCA GCGACAGCGC CATCAAGTTG
CCCGATGTGT ATCATGGCAA TCTCATGGTG TTCAAAGTAT TCGATAAAGT GAGCATGGGT
CTTATCATGA TCAATAACCG TCCGGTGCGT GCCGATGACA AGCTATCAGT GCCTGCAGAA
ACCGGGATAA CGGGGGAATA A
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| Protein sequence | MADTLTLKPG HPDTYVVVKG DTLWDISAKF LNDPWRWPKL WNANPQIANP HLIYPGDRLT
LVFIDGQPRL VVKPQVRKSP EGRVMPKGGA IPAVNLELIQ PYLSQNRVVD DDWFAQQPMI
LGGESPSRFH IESDVIYVQA ELPVGMKVAA YDVGRIFTDK TTEETLGREV ILTASGRVVE
SGPISKIQIS TNLRETRPGN RVLPIEDEAL MSAYFMPKPA DVTDAYVIGT EKDIREVGKL
DVVYISKGES DGVEPGDVFA IHRDGETVVI NKEGTPVPSI DRSAYGDLMA TFGSDSAIKL
PDVYHGNLMV FKVFDKVSMG LIMINNRPVR ADDKLSVPAE TGITGE
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