Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0042 |
Symbol | |
ID | 4602299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 46088 |
End bp | 47050 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639779351 |
Product | methionyl-tRNA formyltransferase |
Protein accession | YP_925924 |
Protein GI | 119773184 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0223] Methionyl-tRNA formyltransferase |
TIGRFAM ID | [TIGR00460] methionyl-tRNA formyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.601603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.144256 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAAGCCAC TGAAAATCAT CTTTGCTGGC ACGCCGGATT TTGCTGCCCG CCACCTGCAG GCCCTGCTGA CATCTGAGCA TGAAGTCATA GCCGTCTACA CCCAACCCGA CCGTCCCGCC GGACGGGGGC AAAAACTCAC ACCCAGCCCG GTGAAGTCAC TGGCGCTTGA ACACCAGATC CCTGTTTATC AGCCTAAATC TCTTCGCAAA GAAGAAGCGC AGCAGGAACT GGCGGCCCTC GGTGCCGACA TCATGGTGGT GGTGGCCTAT GGCCTGATCC TGCCCAAGGT GGTGCTGGAT ACTCCACGCC TCGGCTGCAT CAATGTTCAC GGCTCCATTC TGCCGCGCTG GCGCGGCGCG GCACCAATTC AACGCGCCCT GTGGGCCGGT GACACCGAGA CCGGAGTCAC CATCATGCAA ATGGATGTGG GTCTGGATAC CGGCGATATG CTGCTGAAAA CCCATCTACC CATCGAAGAT GACGACACCT CCGCCAGCCT GTATGAAAAA CTGGCCGGTC AAGGCCCGGC GGCACTGTTG GACGCCCTCG CCGCCCTCAG TGAAGGCACC TTGAGCGCCG AAAAGCAGGA CGAAGCACTG GCCAACTATG CTGAGAAGCT CAGCAAAGAA GAGGCACGTC TCGATTTTGC CAAGCCCGCC AAAAATCTGT GGCAGGAAGT ACGTGCCTTT AACCCCTGGC CGGTGAGCTA TTTTGAGCAT CAGGGACAGA CCATCAAGGT ATGGCAGACA AGTGTGCTGG CTGAACCCAG CACCAAGGCG TCCGGCACCA TAGTTGCCGC AGGTAAACAA GGCATAGACA TCGCTACTGC CGATGGCATG CTGCGCATTC ATAAAATGCA GCTGCCCGGT AAAAAGCCGA TGGACGTGGC CGACATCCTC AATAGCCGTG GTGACTGGTT CACTCCCGGC ACCCTGCTGG CAAGCCCAGA GGCAAGTGAG TAA
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Protein sequence | MKPLKIIFAG TPDFAARHLQ ALLTSEHEVI AVYTQPDRPA GRGQKLTPSP VKSLALEHQI PVYQPKSLRK EEAQQELAAL GADIMVVVAY GLILPKVVLD TPRLGCINVH GSILPRWRGA APIQRALWAG DTETGVTIMQ MDVGLDTGDM LLKTHLPIED DDTSASLYEK LAGQGPAALL DALAALSEGT LSAEKQDEAL ANYAEKLSKE EARLDFAKPA KNLWQEVRAF NPWPVSYFEH QGQTIKVWQT SVLAEPSTKA SGTIVAAGKQ GIDIATADGM LRIHKMQLPG KKPMDVADIL NSRGDWFTPG TLLASPEASE
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