| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0039 |
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| Symbol | |
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| ID | 4602296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 41933 |
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| End bp | 43375 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779348 |
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| Product | potassium uptake protein TrkH |
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| Protein accession | YP_925921 |
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| Protein GI | 119773181 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.169188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TAAGACCGCT GCTCTTTATA CTCGGCACTT TTTTGTCGAT GTTGGCGGGC
TTTATGCTTA TCCCTCTGCT GTTTGCCTTG TTGCATGGGG ATGAGACTTC CGGCGCCTTT
ATGATTTCTT CTCTGGCCAC AGGGGCAGCC GCCAGTTTCT GTATCAGCAG CGGCCAGCAG
AAAAATATCA AACTCAATAT TCGCGACATG TTTTTACTGA CCAGTATCAC CTGGTTGGTG
GTCAGCCTGT TCGCGGCCAT GCCTTTTACC CTGTATCACG GTATTAACTA TACCGATGCC
TTCTTCGAAA CCATGTCGGG TATCACCACC ACGGGTTCGA CCGTGCTGTC GGGCTTGGAT
AGCATGGACC GCAGCATCCT GATTTGGCGC TCTTTGCTGC AATGGCTGGG GGGAATTGGC
TTTATCGTGA TGGCGGTGGC CGTACTGCCT TTTTTGAACG TAGGTGGCAT GCGGCTGTTT
CGCACTGAGT CATCGGACTG GAGCGACAAG TCCACACCTC GCACCCAGGA CATGGCCAAG
AATTTGTTTC TGGTTTACAT CCTGCTGACC ATACTTTGCG GCCTCGGCTA TCACCTGGCG
GGCATGGATT GGTTTGAGGC CATTAACCAC GCCATGACCA CCCTCTCCAC AGGCGGCTAT
TCAACATCAG ACGAGTCCAT GGCACATTTC AGCCCGGCTG CACACTGGGT AGGCACCAGC
TTTATGCTGG CAGGCGGTTT GCCTTTACTT ATCTTTGTGC AGATGCTGCG TGGCCGCAGC
CTGACGGTAT GGAATGATGC CCAGGTGAAA GGCTTTTTGC TGTTTGTGGC TCTGGTCAGT
GTTGCGCTCA GTTTCTGGCT GGCCGATGTG AAAGATCTCG CCTTTATGGA TGCCCTGCGT
CTGACCAGCT TTAACGTAGT CTCTGTGGTT ACTACCACCG GCTATGGCCT TACCGATTAT
GGAAGCTGGG GGCCACTGGC CAATGTGGCA TTTTTGTTTT TGATGTTTGT GGGCGCCTGC
TCTGGTTCTA CCTCTGGCGG GATTAAAATC TTCCGCTTTC AAATCGCCGG CGCCATCATG
CGCGAGCAAT TAAAGCAGCA AATACATCCT GCGGGGATTT TCCGCGAGCG TTACAACAAC
CGCCCCATCA GCGAAGATAT TATTCGTTCC CTGGTGACCT TTATCCTGCT GTTTATGGGG
GTGACGGTCG CGTTGGCAGT GTTTTTGGTG GCCGTGGGTG TCGACCCCAT GTCGAGTCTC
ACCGGTGCCA TCACGGCGGT CACCAATGTC GGCCCGGGGC TTGGACCCGT GATAGGCCCG
GCGGGTAACT TTGCCAGCCT GCCCGACAGT GCCAAGTGGG CCCTCTCGTT GGGTATGTTA
TTGGGGCGGC TGGAGATCCT CACGGTTGCC GTGCTCTTCC ACCCCAAGTT CTGGCACTAC
TGA
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| Protein sequence | MLNLRPLLFI LGTFLSMLAG FMLIPLLFAL LHGDETSGAF MISSLATGAA ASFCISSGQQ
KNIKLNIRDM FLLTSITWLV VSLFAAMPFT LYHGINYTDA FFETMSGITT TGSTVLSGLD
SMDRSILIWR SLLQWLGGIG FIVMAVAVLP FLNVGGMRLF RTESSDWSDK STPRTQDMAK
NLFLVYILLT ILCGLGYHLA GMDWFEAINH AMTTLSTGGY STSDESMAHF SPAAHWVGTS
FMLAGGLPLL IFVQMLRGRS LTVWNDAQVK GFLLFVALVS VALSFWLADV KDLAFMDALR
LTSFNVVSVV TTTGYGLTDY GSWGPLANVA FLFLMFVGAC SGSTSGGIKI FRFQIAGAIM
REQLKQQIHP AGIFRERYNN RPISEDIIRS LVTFILLFMG VTVALAVFLV AVGVDPMSSL
TGAITAVTNV GPGLGPVIGP AGNFASLPDS AKWALSLGML LGRLEILTVA VLFHPKFWHY
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