| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0032 |
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| Symbol | fadB |
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| ID | 4602289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 34377 |
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| End bp | 36527 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779341 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_925914 |
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| Protein GI | 119773174 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.58594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0455208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC AATCCAGGTC GAATTGACCG CTGACAAGAT TGCCCGGCTC
TGTTTCAACG CTCCCGGCTC GGTCAACAAG TTCGATCGTG AAACCCTCGC CTCTCTCAAT
GCCGCACTCG ATGTTCTCAA AGACTCAGAT GCCAAGGCCG CTGTTCTGAC CTCTGGTAAA
GACACCTTTA TCGTTGGCGC CGACATCACC GAGTTTTTGG CCCTCTTCGC CGAAGAAGAC
GCCAAGCTGA TGGAGTGGAT TGCCCAGGCC AACGTAGTAT TTAACAAACT CGAAGACTTG
CCTTTCCCAA CGGTATCCGC CATCAAAGGA TTCGCACTGG GCGGCGGCTG TGAAGCAATT
CTGGCCACCG ATTTCCGTGT TGCCGATACC AGCGCCAAGA TAGGCCTGCC AGAAACCAAG
CTCGGCCTCA TCCCCGGTTT TGGTGGCACC GTGCGCCTGC CGCGCCTGAT TGGTGCCGAT
AACGCACTGG AGTGGATCAC CACAGGTAAA GATCAGCGCC CCGAAGATGC CCTTAAAGTG
GGGGCAATTG ATGCGGTAGT CGCCCCCGAA AATCTGGAAG CAGCAGCAAT TCAGATGCTC
AACGATGCCC TCGCCGGCAA GCTCGACTGG CAAGCCCGCC GCGCCCGCAA ACAGGCACCG
CTGACGCTGC CAAAACTCGA AGCCATGATG TCTTTCACCA CCGCCAAAGG CATGGTGTAT
GCCGTTGCCG GCAAGCACTA CCCTGCGCCC ATGGCGGCTG TGTCAGTGGT TGAGCAAGCT
GCCGGTATGA GCCGCGCCGA AGCTCTGGTG GTTGAGCACA ATGCCTTTAT CAAGCTGGCT
AAAACCGATG TAGCCACTGC GCTTATCGGT ATTTTCCTCA ACGACCAGTT GGTAAAAGGC
AAGGCGAAAA AGGCCTCCAA ACTGGCCAAG GATATCAAGC ACGCCGCCGT ATTGGGCGCC
GGTATCATGG GTGGTGGTAT TGCCTACCAA AGCGCCAGCA AGGGCACACC TATCGTCATG
AAAGACATCA ATCAGGCCGC ACTGGATTTG GGTGTGAACG AAGCCGCCAA GCTGCTCAGC
GCCCAGGTTG CCCGAGGCCG CTCAACGCCA GACAAAATGG CGAAGGTACT CAATAACATC
ACCCCGGCTC TGGACTATGC GCCACTAAAA GACGTGAACG TTGTTGTAGA AGCTGTGGTG
GAAAATCCCA AGGTTAAAGC CATGGTGCTT GCCGATGTGG AAAATGTGGT GGCCGACGAT
GCCATTATCG CTTCCAACAC TTCCACCATC TCCATCGACT TACTGGCGAA GAGCCTTAAA
AACCCTGCCC GTTTCTGCGG TATGCACTTC TTTAACCCGG TACACAAGAT GCCGCTGGTT
GAGGTAATCC GTGGTAAAGA TACCAGCGAA GAAACCGTTG CCTCAGTGGT GGCTTATGCC
AGCAAGATGG GCAAAACCCC CATAGTGGTA AACGACTGCC CGGGCTTCTT CGTTAACCGT
GTACTCTTCC CTTACTTTGC TGGCTTCAAT GGTCTGTTGG CCGATGGCGG CGACTTCGCA
GCCATCGACA AGGTAATGGA AAAGCAGTTT GGCTGGCCAA TGGGTCCTGC CTACCTGCTG
GACGTTGTTG GTCTGGACAC CGGCCACCAC GCCCAGGCCG TAATGGCGGA TGGTTTCCCT
GACCGCATGG GCAAGTCAGA TAAAGATGCC ATTGATGTGA TGTACGAAGC CGGTCGCCTC
GGTCAGAAGA ACGGTAAGGG CTTCTACCAG TACAGTATCG ATAAACGTGG CAAGCCGAAG
AAAGACGTAG ACCCAGCCTC TTACACCATG CTTGCCGAAG CCTTTGGTGC TCAGAAAGCC
TTCGAGGCCG ATGAAATTAT TGCCCGCACC ATGATCCCCA TGATCATTGA AACGGTACGC
TGCCTTGAAG AAGGCATTGT TGCCAGCCCG GCCGAAGCCG ATATGGGGCT GGTGTATGGC
CTTGGCTTCC CGCCATTCCG CGGTGGCGTA TTCCGCTATC TGGATACCAT GGGCGTGGCC
AACTTTGTGG CTCTGGCCGA CAAATACGCC CATCTGGGCG GCCTGTATCA GGTGACCGAC
GCCATGCGCG AACTTGCCAG TAACAATGGC AGCTACTATC CAAAGGCCTG A
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| Protein sequence | MIYQSPTIQV ELTADKIARL CFNAPGSVNK FDRETLASLN AALDVLKDSD AKAAVLTSGK
DTFIVGADIT EFLALFAEED AKLMEWIAQA NVVFNKLEDL PFPTVSAIKG FALGGGCEAI
LATDFRVADT SAKIGLPETK LGLIPGFGGT VRLPRLIGAD NALEWITTGK DQRPEDALKV
GAIDAVVAPE NLEAAAIQML NDALAGKLDW QARRARKQAP LTLPKLEAMM SFTTAKGMVY
AVAGKHYPAP MAAVSVVEQA AGMSRAEALV VEHNAFIKLA KTDVATALIG IFLNDQLVKG
KAKKASKLAK DIKHAAVLGA GIMGGGIAYQ SASKGTPIVM KDINQAALDL GVNEAAKLLS
AQVARGRSTP DKMAKVLNNI TPALDYAPLK DVNVVVEAVV ENPKVKAMVL ADVENVVADD
AIIASNTSTI SIDLLAKSLK NPARFCGMHF FNPVHKMPLV EVIRGKDTSE ETVASVVAYA
SKMGKTPIVV NDCPGFFVNR VLFPYFAGFN GLLADGGDFA AIDKVMEKQF GWPMGPAYLL
DVVGLDTGHH AQAVMADGFP DRMGKSDKDA IDVMYEAGRL GQKNGKGFYQ YSIDKRGKPK
KDVDPASYTM LAEAFGAQKA FEADEIIART MIPMIIETVR CLEEGIVASP AEADMGLVYG
LGFPPFRGGV FRYLDTMGVA NFVALADKYA HLGGLYQVTD AMRELASNNG SYYPKA
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