| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0031 |
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| Symbol | fadA |
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| ID | 4602288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 33194 |
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| End bp | 34357 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779340 |
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| Product | 3-ketoacyl-CoA thiolase |
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| Protein accession | YP_925913 |
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| Protein GI | 119773173 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.871061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0355813 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAAG CCGTTATCGT AGATTGCATC CGCACTCCCA TGGGCCGTTC CAAGGGTGGT
GTATTCCGTA ATGTTCGCGC CGAGACACTG TCTGCCGAGT TGATGAAAGC CCTGTTGCTG
CGTAACCCCG GCGTTGACCC AAACACCATT GAAGATGTGA TTTGGGGCTG TGTTCAGCAA
ACGCTGGAGC AAGGCTTTAA CATAGCCCGC AACGCTTCAC TGCTGGCTGG AGTGCCTAAA
ACTGCCGGTG CTGTGACAGT TAACCGCCTC TGTGGTTCTT CCATGGAAGC CCTGCATCAG
GCTTCCCGTG CCATCATGAC AGGTATGGGT GACACCTTTA TCATCGGTGG TGTCGAGCAC
ATGGGTCATG TACCTATGAA CCACGGTGTG GACTTCCACC CTGGCCTCGC TGCCAATGTA
GCCAAGGCCT CAGGTATGAT GGGCCTGACT GCCGAAATGC TGGGTAAGCT GCACGGTATC
AGCCGTGAAA TGCAGGACCA GTTTGCTGTG CGCTCACATC AGCGCGCCCA TGCTGCATCC
ATTGAAGGCC GCTTCGCTAA CGAGATATAT GCCATTGAAG GCCACGATGC CAACGGCGCC
CTTATCAAGG TGGATTACGA CGAAGTTATC CGTCCGGAAA CTACGCTTGA ATCTCTGGCT
GGTCTGCGCC CTGTATTCGA TCCTGCCAAT GGAACCGTGA CCGCAGGTAC GTCTTCAGCC
CTGTCGGACG GCGCCGCAGC CATGTTGGTG ATGGAAGAAG AAAAAGCCCG CGCCTTGGGT
CTGACGATTC GAGCCCGGGT TCGCTCCATG GCCGTAGCCG GTTGTGACGC CGCTATCATG
GGTTATGGCC CAGTGCCCGC AACCCAGAAA GCACTGGCTC GTGCCGGTCT CAGCATTCAG
GACATGGATG TGATTGAGCT GAACGAAGCC TTTGCCGCCC AATCTCTGCC ATGCGTGAAA
GACTTGGGGC TAATGGATGT GGTGGAAGAC AAGGTGAACC TCAATGGTGG TGCAATTGCA
TTGGGTCACC CTCTGGGCTG CTCCGGAGCC CGTATCTCCA CCACCCTGAT CAACCTGATG
GAACACAAGG ACGCCACTCT GGGCCTGGCA ACTATGTGTA TCGGTTTGGG TCAAGGCATA
GCCACTGTGT TTGAACGTGT TTAA
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| Protein sequence | MKQAVIVDCI RTPMGRSKGG VFRNVRAETL SAELMKALLL RNPGVDPNTI EDVIWGCVQQ
TLEQGFNIAR NASLLAGVPK TAGAVTVNRL CGSSMEALHQ ASRAIMTGMG DTFIIGGVEH
MGHVPMNHGV DFHPGLAANV AKASGMMGLT AEMLGKLHGI SREMQDQFAV RSHQRAHAAS
IEGRFANEIY AIEGHDANGA LIKVDYDEVI RPETTLESLA GLRPVFDPAN GTVTAGTSSA
LSDGAAAMLV MEEEKARALG LTIRARVRSM AVAGCDAAIM GYGPVPATQK ALARAGLSIQ
DMDVIELNEA FAAQSLPCVK DLGLMDVVED KVNLNGGAIA LGHPLGCSGA RISTTLINLM
EHKDATLGLA TMCIGLGQGI ATVFERV
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