Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0019 |
Symbol | |
ID | 4602276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 18058 |
End bp | 19041 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779328 |
Product | putative transmembrane protein |
Protein accession | YP_925901 |
Protein GI | 119773161 |
COG category | [S] Function unknown |
COG ID | [COG3817] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00317207 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCTTA TCAGCATCAA GGATATCTAC TTGCTGATTG GGCTGGTGGT GGCCATTTTG GTGGTACTGA CCCTGAGGGA CAAACAACAC CCCAAACGGT TCACCACAGC CTTGTTTTGG GGCCTGTTCG GAAGCCTGTT CCTGTTTGGC GACCTCGCGG TGAATACCCT GGGCGCCAAG TTGGCACACC AGATTGCCGG TGCCATGGTG ATTGGTATCG CCCTGCTGGC GGGAATGGGC AGGGTCAGTC TTGGCAGCTA TCAGGAAACC ACCCCGGCGC AGAAGGAGCA CAGCGCCAAA CAACTCGGCA ATCAGCTCTT TCTGCCGGCA CTGCTTATCC CCTTACTGAC AGTAGCGGCC ACCCTGTTGC TTGCCGGAGT CAACTTCGGT GATGTACTGC TACTCGACCC CAAACATCAA ACCCTGGCGG CTCTGGCACT GGCATGCAGT ATTGCCCTGC TGTTGGGCTG GCGTCTGACT GGCGATAGCC CACTCAAGGC CGTAGCCGAG TCGCGCAGGC TGGTGGACAG CATCGGCTGG GCCGCAATTC TGCCACAAAT GTTGGCTATG CTGGGCGGCG TGTTTGTGGT TGCACAAACC GGTGACAGCA TCAAGGCACT GGTCAGCCTC TTTATTGACC CGAGTAATCG CTTTGGACTG GTGGTTATTT ACTGTGTTGG GATGGCGCTG TTTACCATGA TCATGGGCAA CGCCTTTGCT GCCTTCCCGG TAATGACCGC CGGTATCGCC CTGCCTTTTT TGATTGAAGG GCAAGGAGCC AGTCCGGCGC CCTTGATGGC CATTGGCATG TACTCGGGTT ATTGTGGCAC CCTGATGACG CCCATGGCTG CCAACTTCAA CATAGTACCA GCGGCCCTGC TAGACCTTGA CGACAAGTAT CAGGTCATTA AGGTACAAAT ACCCACGGCG CTGGCGTTGC TGACAACCAA CATTTTGCTG ATGTATTTCA TCGTTTTTGA CTGA
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Protein sequence | MSLISIKDIY LLIGLVVAIL VVLTLRDKQH PKRFTTALFW GLFGSLFLFG DLAVNTLGAK LAHQIAGAMV IGIALLAGMG RVSLGSYQET TPAQKEHSAK QLGNQLFLPA LLIPLLTVAA TLLLAGVNFG DVLLLDPKHQ TLAALALACS IALLLGWRLT GDSPLKAVAE SRRLVDSIGW AAILPQMLAM LGGVFVVAQT GDSIKALVSL FIDPSNRFGL VVIYCVGMAL FTMIMGNAFA AFPVMTAGIA LPFLIEGQGA SPAPLMAIGM YSGYCGTLMT PMAANFNIVP AALLDLDDKY QVIKVQIPTA LALLTTNILL MYFIVFD
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