Gene Sama_0019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0019 
Symbol 
ID4602276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp18058 
End bp19041 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content56% 
IMG OID639779328 
Productputative transmembrane protein 
Protein accessionYP_925901 
Protein GI119773161 
COG category[S] Function unknown 
COG ID[COG3817] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00317207 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCTTA TCAGCATCAA GGATATCTAC TTGCTGATTG GGCTGGTGGT GGCCATTTTG 
GTGGTACTGA CCCTGAGGGA CAAACAACAC CCCAAACGGT TCACCACAGC CTTGTTTTGG
GGCCTGTTCG GAAGCCTGTT CCTGTTTGGC GACCTCGCGG TGAATACCCT GGGCGCCAAG
TTGGCACACC AGATTGCCGG TGCCATGGTG ATTGGTATCG CCCTGCTGGC GGGAATGGGC
AGGGTCAGTC TTGGCAGCTA TCAGGAAACC ACCCCGGCGC AGAAGGAGCA CAGCGCCAAA
CAACTCGGCA ATCAGCTCTT TCTGCCGGCA CTGCTTATCC CCTTACTGAC AGTAGCGGCC
ACCCTGTTGC TTGCCGGAGT CAACTTCGGT GATGTACTGC TACTCGACCC CAAACATCAA
ACCCTGGCGG CTCTGGCACT GGCATGCAGT ATTGCCCTGC TGTTGGGCTG GCGTCTGACT
GGCGATAGCC CACTCAAGGC CGTAGCCGAG TCGCGCAGGC TGGTGGACAG CATCGGCTGG
GCCGCAATTC TGCCACAAAT GTTGGCTATG CTGGGCGGCG TGTTTGTGGT TGCACAAACC
GGTGACAGCA TCAAGGCACT GGTCAGCCTC TTTATTGACC CGAGTAATCG CTTTGGACTG
GTGGTTATTT ACTGTGTTGG GATGGCGCTG TTTACCATGA TCATGGGCAA CGCCTTTGCT
GCCTTCCCGG TAATGACCGC CGGTATCGCC CTGCCTTTTT TGATTGAAGG GCAAGGAGCC
AGTCCGGCGC CCTTGATGGC CATTGGCATG TACTCGGGTT ATTGTGGCAC CCTGATGACG
CCCATGGCTG CCAACTTCAA CATAGTACCA GCGGCCCTGC TAGACCTTGA CGACAAGTAT
CAGGTCATTA AGGTACAAAT ACCCACGGCG CTGGCGTTGC TGACAACCAA CATTTTGCTG
ATGTATTTCA TCGTTTTTGA CTGA
 
Protein sequence
MSLISIKDIY LLIGLVVAIL VVLTLRDKQH PKRFTTALFW GLFGSLFLFG DLAVNTLGAK 
LAHQIAGAMV IGIALLAGMG RVSLGSYQET TPAQKEHSAK QLGNQLFLPA LLIPLLTVAA
TLLLAGVNFG DVLLLDPKHQ TLAALALACS IALLLGWRLT GDSPLKAVAE SRRLVDSIGW
AAILPQMLAM LGGVFVVAQT GDSIKALVSL FIDPSNRFGL VVIYCVGMAL FTMIMGNAFA
AFPVMTAGIA LPFLIEGQGA SPAPLMAIGM YSGYCGTLMT PMAANFNIVP AALLDLDDKY
QVIKVQIPTA LALLTTNILL MYFIVFD