| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0009 |
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| Symbol | |
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| ID | 4602266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 7951 |
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| End bp | 9576 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779318 |
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| Product | inner membrane protein, 60 kDa |
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| Protein accession | YP_925891 |
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| Protein GI | 119773151 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000942032 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000799802 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAATCAC AACGCAATCT ATTGCTCATC GGCCTGCTGT TTGTCAGCTT TTTGCTTTGG
CAACAGTGGG AATCCGACAA GGCGCCCAAG CCAGCCACAG AAGTAACTGC GGCGGCCCAA
ATCCACGACC AGGCTATCAA CAGTGACGTT CCAACAGCCG ATGCCGGTGT ACCTGCCACA
GTGGCAGCAA CCCAAAACCT GATCCTCGTT ACCACAGATC AACTGGAAAT CCAGATTAAT
CCTGTGGGCG GTGACATAGT GCATGCCGCC CTGCTGACCC ATAAGCTGGA ACAAAACGAA
GAAGCACCTT TTGTTCTGCT GGAGCAGAAA AACAACTTCT CCTACATCGC CCAGAGTGGT
CTGATTGGTC GTGATGGTAT CGACAGCGCC GCCAGTGGCC GCGCCAAGTT CGCTGCCGCC
GCCGACGCCT ACACCCTGGC TGACGGCCAG GACACCCTGG AAGTGCCACT GACTCTGACC
ACAGATGCCG GTGTAACCTT CACCAAGGTG TTCGTGTTCA AGCGTGGTCA GTTTGATGTG
GGCGTGGATT ACCGCGTTGC CAACAACTCT GCAGCCCCTG TACAGGTGCA GATGTATGGC
CAAATCAAGC AAACCATCAC TGCCAGCGAA AGCAGCATGA TGATGCCCAC CTACCGTGGC
GCCGCCTTCT CAACCGCCGA TGTGCGTTAT GAGAAGTACA GCTTCGATGA CATGGGTAAA
AAAGACCTCG AAGAGCCGAC TCTGGGTGGT TGGGTTGCCA TGCTGCAACA CTACTTCGTG
TCTGCCTGGG TTCCCGCTGC AGCTGACAAG AACACCCTGT TCACCTCTGT CAGTGCCGGT
GGTCTGGCCA ATATCGGCTT CAAGGGCTCG GTTCATGACG TAGCACCCGG TGCCACAGAA
ACCATTTCCG CCACCTTCTA CGTTGGTCCA AAAGATCAGG CTGCTCTGTC TGCTTTGTCT
GACACCCTGA ACCTGGTAGT GGATTACGGT TTCCTCTGGT GGCTGGCTGT ACCAATCCAC
TGGATCCTGA TGTTCTTCCA AAGCCTGGTG CACAACTGGG GTGTGGCCAT CATTCTGGTG
ACCCTGACTG TTCGTGGTCT CTTGTATCCA CTGACCAAGG CACAGTATGT GTCCATGGCC
AAGATGCGTA ACCTGCAGCC TAAATTGCAG GACCTGAAAG ACCGCTTTGG TGATGACCGT
CAGAAGATGG GTCAGGCCAT GATGGAGCTG TACAAGAAGG AAAAGGTTAA CCCCATGGGC
GGCTGTCTGC CCATCCTGCT GCAGATGCCA ATCTTCATCG CCCTGTACTG GGTGCTGCTG
GAAAGCGTTG AACTGCGCCA CGCGCCATTT ATGCTGTGGA TCCAGGATTT GTCAGTGCAG
GACCCTTACT ACGTACTGCC GCTGCTGATG GGCGCTTCCA TGTGGGCGAT GCAAAAGATG
CAGCCAATGG CCCCCAACAT GGACCCGATG CAACAAAAAA TGCTGCAGTG GATGCCGATG
ATCTTCACCG TATTCTTCCT GTGGTTCCCA GCAGGTCTGG TACTCTACTG GCTGGTGGGT
AACCTGGTTG CCATCACCCA GCAGAAGATT ATTTATGCCT CACTGGAGAA AAAAGGCTTA
AAATAA
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| Protein sequence | MESQRNLLLI GLLFVSFLLW QQWESDKAPK PATEVTAAAQ IHDQAINSDV PTADAGVPAT
VAATQNLILV TTDQLEIQIN PVGGDIVHAA LLTHKLEQNE EAPFVLLEQK NNFSYIAQSG
LIGRDGIDSA ASGRAKFAAA ADAYTLADGQ DTLEVPLTLT TDAGVTFTKV FVFKRGQFDV
GVDYRVANNS AAPVQVQMYG QIKQTITASE SSMMMPTYRG AAFSTADVRY EKYSFDDMGK
KDLEEPTLGG WVAMLQHYFV SAWVPAAADK NTLFTSVSAG GLANIGFKGS VHDVAPGATE
TISATFYVGP KDQAALSALS DTLNLVVDYG FLWWLAVPIH WILMFFQSLV HNWGVAIILV
TLTVRGLLYP LTKAQYVSMA KMRNLQPKLQ DLKDRFGDDR QKMGQAMMEL YKKEKVNPMG
GCLPILLQMP IFIALYWVLL ESVELRHAPF MLWIQDLSVQ DPYYVLPLLM GASMWAMQKM
QPMAPNMDPM QQKMLQWMPM IFTVFFLWFP AGLVLYWLVG NLVAITQQKI IYASLEKKGL
K
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