| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0008 |
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| Symbol | trmE |
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| ID | 4602265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 6502 |
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| End bp | 7863 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779317 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_925890 |
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| Protein GI | 119773150 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.185087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000721309 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACGACAG ACACCATAGT GGCACAGGCC ACCGCGCCCG GTCGGGGCGG CGTAGGCATC
ATCCGGGTAT CCGGTAAGCT GGCAAGCGAT GTTGCCCATA CCCTGCTGGG ACACCTGCCC
AAACCCCGCT ACGCCGATTT CTGCGACTTC AAAGCGGCCG ATGGCAGCGT GATTGACCAG
GGTATTGCCC TTTTCTTCAA AGGCCCCAAC TCCTTTACCG GCGAAGATGT ACTGGAGCTG
CAGGGCCACG GCGGCCAGGT GGTGATGGAC ATGCTCATCC GCGCCGTGCT CAAGGTCAAA
GGAGTGCGTA TTGCCCGCCC CGGTGAGTTC AGCGAGCAAG CCTTTATGAA CGACAAGCTG
GATTTGACCC AGGCCGAAGC CATCGCAGAC CTGATTGATG CCACCAGCGA ACAGGCCGCC
AAGAGTGCCC TGCACTCACT GCAAGGCGAG TTCTCCACTC AGGTGCATAC CCTGGTGGAC
AAAATAACTA ACCTGCGCCT GTATGTAGAA GCCGCCATCG ACTTTCCCGA CGAAGAAGTG
GATTTCTTAA GTGACGGCAA AATAGCCGCC GCCCTTTACG CCATTATCGA CCAACTTGAT
GAAGTGCAGG CCAGTGCAAA ACAGGGCAGC ATTATCCGTG AAGGCATGAA AGTGGTGATT
GCCGGGCGCC CCAACGCCGG TAAATCCAGC CTGCTCAATG CCCTGGCAGG GAAAGAATCG
GCCATTGTGA CCGACATAGC CGGCACCACC CGCGACGTAC TGCGAGAGCA TATTCACCTC
GACGGCATGC CGCTGCACAT TATTGATACC GCCGGTCTGC GGGACACCAC AGACGAAGTG
GAGCGTATCG GTATAGAGCG CGCCTGGAGC GAAATAGCCA GCGCCGATCG GGTGCTGTTT
ATGGTGGATG GCACAGACAC TGCCGCCGTT GACCCCCACG AGATATGGCC CGATTTTATC
GACCGCCTGC CCAAAGCCAT GGGGGTTACC GTGGTCCGTA ACAAGGCTGA TCTGACCGGT
GAACCTTTGG AAGCCACCGA AGAGCAAGGC TACAGCGTGT ATCGGATTTC GGCCAAAACC
GGCCTGGGTG TGGACGCTCT CAAGCAGCAC CTCAAATCCC TGATGGGTTA TCAAAGTAAC
CTCGAAGGCG GCTTTATCGC CCGTCGTCGT CACCTCGAAG CATTGGAGCA GGCATCTGAG
CACCTGCAAC TGGGCAAGGT ACAGCTGGAA GTATATCTGG CAGGTGAGCT GCTGGCAGAA
GAGCTGCGGA TGGCACAGCA GGCACTGTCT GAAATTACCG GCGAATTTAC CTCAGACGAC
TTGCTGGGCA AGATTTTCAG TTCTTTCTGT ATCGGTAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRVSGKLASD VAHTLLGHLP KPRYADFCDF KAADGSVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQVVMD MLIRAVLKVK GVRIARPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALHSLQGE FSTQVHTLVD KITNLRLYVE AAIDFPDEEV
DFLSDGKIAA ALYAIIDQLD EVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTDIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDEV ERIGIERAWS EIASADRVLF
MVDGTDTAAV DPHEIWPDFI DRLPKAMGVT VVRNKADLTG EPLEATEEQG YSVYRISAKT
GLGVDALKQH LKSLMGYQSN LEGGFIARRR HLEALEQASE HLQLGKVQLE VYLAGELLAE
ELRMAQQALS EITGEFTSDD LLGKIFSSFC IGK
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