Gene Noca_4679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_4679 
Symbol 
ID4598223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp4959854 
End bp4963957 
Gene Length4104 bp 
Protein Length1367 aa 
Translation table11 
GC content71% 
IMG OID639779288 
ProductPKD domain-containing protein 
Protein accessionYP_925861 
Protein GI119718896 
COG category[S] Function unknown 
COG ID[COG4412] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03296] M6 family metalloprotease domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCACCGC GTCGCCTCCG GCGACCCCTC GAGATTGCGT CCTCCATGAC CAACCCTCCA 
TCGAGCACCT CGTCGAGCAT CCCGGCGCGC ACGCTGCGCC CCTGGCGGAC CGCAGCGGTC
ACCACCGCGC TGGCGGTCGC CCTCACCACC GGCCTGTCGG CTGTCCTCGC CCCGGTCGGG
GCCGCCGCAC CCGCCAGCAC CCAGCCCCGG CCGATCGGCG CCCACGGCCT GTCCGTCTCC
TTCGACCGCC AGTCGGCCAC CATCGAGCGC GGCGAGCGGT TCCGGGTGTC CGGCACCGTC
TCGACGCTGA GCCAGACCTC GCTCACCGCG GTGCCCCGGA CCGGTGAAGG GGTGCCGGCG
AGCTTCACCC TGACCGTCAC CGACCCCGCC GGCAGGGTGC TCGGCACCCA GGCCGTGACC
GCCGCCGACG ACGGCAGCTT CGCCACCATG GTGCCCGGCG CCATCACCGA CGGCCTCGCC
GACGCGGACC TGCTGCGACT GGGCCTGCGC GCCGTGGACG CGACGTACGA CGACCACCAG
GCCGCCGACG CCGGCGCCGG ATCGGTGGCG GTCCGCGCGG CCGCGACCGG GCTCCAGGTC
GAGAACAGCT TCGTCTCGGC CGTCGGCTGG GTGAAGCCGG GCGAGGCCTA CCCCTCGCGG
ATCATCGTCC AGAACCCCAC CGCCACCCCG GTGGCCGGCG CCTCGGTCAC GATCACGGCA
CCCGCAGGCA CGAGCTTCAC GAACGCCAGC GGCCCCGGCA CCCACCCGTT CAGCAGCGAC
ACGGTGGCCT GGACGATCCC GTCGGTGCCG GCGGCGACCG GCACGGTGCC CGGCACCGTC
ACCCTGGTCC TGGAGAGCAA GGCCGACACC GTCGCCCAGG ACCCGACGGT GGTCTGGCGC
GACCTGTCCA CCACCGCTCG CCTCACCGCG AGCACCGGGG CCCAGACCGT GGTCAGCCAC
GGCCCCAAGG TGATCCCGCC GAGCGACGCC TTCGACACCG CCCGGTACGG CGACCGCCCG
TTCCCGGTCA TCCCGGTGGA GTACCGCGAC CGCGCGTACA CCGCCGCGCA CACCGGTGAG
CAGCTCGAGG AGGTCATCAA CTCCCCCGCC AAGCCCGGCT CCACCTTCAA CCTGTACCAG
GAGATGTCCC TGGGCCAGCT CTTCCCCAAC GGCAGCGTCC CCTCCGCGGG GATCGCGACG
GCCGACTTCA CCAGCTACGC CCCCGGCTTC CCGTTCACCC AGATCGACCC GACGGCCGTC
AACACCTGCG CCGGCGTCAC GCAGACCGAC ACCCCGGCCG GCGCGATCCC CGCGCCCGGC
ACGGTCGGCG GCCCGGCGTA CACGGAGCGG ATCACCAACG GCGTCTACAA CCTGCCCGGC
ACCACCGGCT ACTACGGCTC CGACGGCGCG GGCTCCGCGG TGATCGGCTC CCTCACCGGC
ATCTCGGCGC TCGCCCAGAT CGACAGCGGC TGCGGGCCGA CCAGCAAGCT CGTCGTGGAC
GCGGCCGCGC TCGCCGACCC CGAGATCGAC TACTCGGACT ACGACACCGA CAAGGACGGC
GTGGTCGACT TCTTCATGGC CGTGTTCGCC GGCTGCGGCG GCAACGGCGC CTCCCAGCTC
GGGCTGTGCA GCGACGACCC CCAGGACGCG CTGCCCTACG ACAACGTCTG GCCGCACAGC
TCGTCGCTGG AGTACTACTA CAACGACGCG AAGACGGGCC TGCCCGGCTT CACCACCGAC
GACCAGCTCA AGGACCTCGA GGGCCGGCCG CTCTGGTACA CCGACAAGAC CTACAAGGAC
ATGACCACGA CCGACAAGGG CGACGCCCTC AAGGTCTTCG TCCGGGTCGG CCCCTACAAC
CTCAACCCCG AGACGGCCAT CGACAAGGCG AGCGTGATCT CGCACGAGTA CGGCCACTCG
CTCGGGCTGC CGGACTTCTA CTCCGTCGGC GGCCGCGAGA CCTACGGCGA CTGGAACCTG
ATGGCGACCG ACAAGTCGCA GAACATGGAC GCCTTCTCCC GCCAGGAGCT CGGCTGGGTC
GTCCCGCAGG TGCTCCGGGC AGGCGAGACC CGGACCGTCG ACGGCTGGAC CGACTCCAAG
CAGGACACCG GCACGATCAC GTGGCAGCGC CCCGACGGGA CGCCGTACAC GCTCACCAAC
GGGCCGGACG GCGTGGTCCA CAACTCGCTG ATGTACGTCG CGCGGCTGCC CGGTCGTCAG
CTGATCGACC CGGCCAAGTT CGACACGGGT GACAAGGCGA CCAAGACCCA CGCGTGGTTC
TCCGGCGCCG GCAACGACTT CGGCTGCGCC AACAACGGCG GCGGCCACAA CCTCGACATC
GCGATCCCGG GGATCAAGGA CCTGCCCGCC GGCTCGACGG TCCGGCTGGA CCTCAAGTCG
CTGTTCGACA TCGAGTGGGA CTTCGACTAC GGCTTCGTGC TGACCTCCAA GGACGGCGGG
AAGAGCTTCA CCTCCCACGA GTCGCTGCGC GACACCCCGA CCACGACGCC GATGACCTCG
AACCCGAACC AGAGCTCCTG CCAGTCGGCG TACGGCAACG GCATCACCGG ATCGAGCGGG
TCCTACTCCG ACCCGGTCAC GGTCCAGCTC GACCGCACCA CCGGCAACTA CCCCGACTCG
CAGTTCGTGG CCGACAGCTT CGACATCTCC GACCTCGTCG GGGCGGCCAC CCCGGTGCTG
CGGTTCAGCT ACGCGACCGA CCCGGGGCTG GCCCGACCCG GCTGGTTCAT CGACGACCTC
AAGGTCACCG CGACCACCCC GAGCGGCGAG AAGGTGCTGC TGCAGACCGA CCTGGAGAAG
GACGGTGGTC CGAGCGACCC GCGGATCTTC AACGGCGGCT GCCAGGCCGA CAACCCGGGC
AGCGACTGCA CCAAGGGCTG GCAGTTCGTG ACCGCCGGTG ACGAGGCGGC CTTCGACCAC
GGCTACTACC TGGAGATGCG GGACCGCTCC GGCTTCGACC TCGACGGGCA CGGACAGATC
GACCGCGACC CGATCGGCTT CGAGCCCGGG CTCTACCTCG CCTACACCGA CGAGGCACAC
GGGTACGGCA ACGCGGGGAC CGACTCCCCG CCGGCCCAGT CGCCCCTGGA CTCGACCCCC
GAGCCCGGCA ACGACACGCC GAACCTGAAC GACGCGGCGT TCACGGCGGC CGCGACCCGC
TCGACGTACA CCGACTCGGG CCCCGGGCAC ACCGACAACT ACACCGACCC GTCGAACACC
ACGGTCGACA GCCGGTACGC CGACGTCGCG AACCCGTGGC GGTTCCAGTA CGGCTGCCTG
GGCTTCCGGG TGCTGTCCAT GGCCGGAAAC ACCAACGGCC CGGCGACGTC CGACGGCGAC
CTGACCGGAT CGGTGCGGTT CACCATGGGC ACCGGCTGCG GTGACTTCGA CTACGGCTAC
AGCCCGACGC CGGCGCCGGC CAACACCAAG CCGTCCGCGC GGGCCACGGC CTCGGCGACG
ACGGTGAGGA CCGGCGACGC GGTGCGCTTC AGCGGATCGG ACAGCACCGA CGCCGAGACG
CCGAACGACC TGGACTACAG CTGGGACTTC GGTGACGGCG GCTCGACCAA GGACGCCGCC
GGCTCCTTCG CCCGGCACAC CTTCACCGAG CCCGGGACGT ACGCCGTCAC CCTCCTGGTC
ACCGACCCCG AGGGCGCCAC CGACACCGAC ACGCTGACCG TCAAGGTCAC CGGCGACTCC
ACAGGTCCCG GCCCCCAGCC GGGGGCCCGG ACGAGCGTCA ACTGCGGCTC CGCCAAGGTG
ACCCGGCACG GCAGCTGGCG CGACGTGCGG CCGGAGCGCG GCGGCGGCTA CTGCGACAAC
GCCGGCAGGG GCAACGGCCG CGACACGATG ACCCTGACCA CCAAGGGCCC GCGTGCGGAG
ATCTTCTTCG GCCGCTCGGT CCACGGCGGG AAGGCGGCGC TGTTCGTCGA CGGCACGCAG
GTCGGGACGA TCAGCTTCCG CAACAAGAAC AGCACCCCGG TCATCGCCTA CCGCAAGGTG
CTGCGCGGCC TCGGCTCCGG CAAGCACCAG CTCCGCCTGG TGGTGCTCAC GGGCCGGGCC
TACGTGGACC GGTTCCGCTT CTAG
 
Protein sequence
MAPRRLRRPL EIASSMTNPP SSTSSSIPAR TLRPWRTAAV TTALAVALTT GLSAVLAPVG 
AAAPASTQPR PIGAHGLSVS FDRQSATIER GERFRVSGTV STLSQTSLTA VPRTGEGVPA
SFTLTVTDPA GRVLGTQAVT AADDGSFATM VPGAITDGLA DADLLRLGLR AVDATYDDHQ
AADAGAGSVA VRAAATGLQV ENSFVSAVGW VKPGEAYPSR IIVQNPTATP VAGASVTITA
PAGTSFTNAS GPGTHPFSSD TVAWTIPSVP AATGTVPGTV TLVLESKADT VAQDPTVVWR
DLSTTARLTA STGAQTVVSH GPKVIPPSDA FDTARYGDRP FPVIPVEYRD RAYTAAHTGE
QLEEVINSPA KPGSTFNLYQ EMSLGQLFPN GSVPSAGIAT ADFTSYAPGF PFTQIDPTAV
NTCAGVTQTD TPAGAIPAPG TVGGPAYTER ITNGVYNLPG TTGYYGSDGA GSAVIGSLTG
ISALAQIDSG CGPTSKLVVD AAALADPEID YSDYDTDKDG VVDFFMAVFA GCGGNGASQL
GLCSDDPQDA LPYDNVWPHS SSLEYYYNDA KTGLPGFTTD DQLKDLEGRP LWYTDKTYKD
MTTTDKGDAL KVFVRVGPYN LNPETAIDKA SVISHEYGHS LGLPDFYSVG GRETYGDWNL
MATDKSQNMD AFSRQELGWV VPQVLRAGET RTVDGWTDSK QDTGTITWQR PDGTPYTLTN
GPDGVVHNSL MYVARLPGRQ LIDPAKFDTG DKATKTHAWF SGAGNDFGCA NNGGGHNLDI
AIPGIKDLPA GSTVRLDLKS LFDIEWDFDY GFVLTSKDGG KSFTSHESLR DTPTTTPMTS
NPNQSSCQSA YGNGITGSSG SYSDPVTVQL DRTTGNYPDS QFVADSFDIS DLVGAATPVL
RFSYATDPGL ARPGWFIDDL KVTATTPSGE KVLLQTDLEK DGGPSDPRIF NGGCQADNPG
SDCTKGWQFV TAGDEAAFDH GYYLEMRDRS GFDLDGHGQI DRDPIGFEPG LYLAYTDEAH
GYGNAGTDSP PAQSPLDSTP EPGNDTPNLN DAAFTAAATR STYTDSGPGH TDNYTDPSNT
TVDSRYADVA NPWRFQYGCL GFRVLSMAGN TNGPATSDGD LTGSVRFTMG TGCGDFDYGY
SPTPAPANTK PSARATASAT TVRTGDAVRF SGSDSTDAET PNDLDYSWDF GDGGSTKDAA
GSFARHTFTE PGTYAVTLLV TDPEGATDTD TLTVKVTGDS TGPGPQPGAR TSVNCGSAKV
TRHGSWRDVR PERGGGYCDN AGRGNGRDTM TLTTKGPRAE IFFGRSVHGG KAALFVDGTQ
VGTISFRNKN STPVIAYRKV LRGLGSGKHQ LRLVVLTGRA YVDRFRF