| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4550 |
|---|
| Symbol | |
|---|
| ID | 4597069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4813306 |
|---|
| End bp | 4814466 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639779161 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_925734 |
|---|
| Protein GI | 119718769 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAACT TCAGCGAGTC CCAGGAGCGC CAGGAGCTCC GCAAGGCCGT GGCCAAGCTG
GCCGCCAAGT ACGGTCGCGA GTGGTTCACC CGGAAGGCGC GCAGCGGCGA GAAGACCACC
GAGCTGTGGC TGGAGATCGG CGCCAACGGC TACCTCGGCA TCAACATCCC CGAGGAGTAC
GGCGGCGGTG GCGGCGGCAT CGGCGACATC GCGGCCGTCT GCGAGGAGCT GGCCGCCCAG
GGCTGCCCGT TGCTGCTGAT GGTCGTGAGC CCGGCGATCT GCGGCACGAT CATCAGCCGC
TACGGCACCC CGGAGCAGAA GCAGCGCTGG CTGCCCGGCA TCTGCGACGG CACCGGCACG
ATGGCGTTCG CGATCACCGA GCCGGACGCC GGCACCAACA CCCACAACAT CACCACGACC
GCGCGGCGGG ACGGCGACGG CTGGGTGCTC AGCGGCCGCA AGATCTACAT CTCGGGCGTC
GACGAGGCCG ACAACATGCT GGTCGTCGCG CGCACCGAGG ACGCGCGCAC CGGCAAGCTC
AAGCCCTGCC TGTTCGTGGT GCCGACCGAC GCCGAGGGCC TCGAGGCCAA GGCGATCGCG
ATGGAGATCG TCAGCCCCGA GCTGCAGTTC GCGGTGTTCC TCGACGACGT CCGGCTGCCC
GCCGACGCGC TGGTCGGGGA CGAGGACGGC GGCCTGGTGC AGCTGTTCGC CGGGCTCAAC
CCGGAGCGGA TCATGGCCGC CTCGTTCTCG ACCGGCCTGG CCCGGCACGC CCTGGACAAG
GCGACGACGT ACGCGAAGGA GCGCACGGTG TTCCAGGGGC CGATCGGGTC GCACCAGGCG
ATCGCGCACC CGCTCGCGGA GTCGCACATC GAGATCGAGA TGGCCCGGCT GATGACCCAG
AAGGCCGCCG CGCTCTACGA CGCGGGCGAC GACATGGGCG CCGGCGAGGC CGCGAACATG
GCGAAGTACG CCGCCGCCGA GGCCGCCTGT CACGCCGTCG ACCGGGCCGT GCAGACCCAC
GGCGGCAACG GCATCACCCA GGAGTACGGC GTGGCCGGGC TCCTGGTCGC CAGCCGCGCG
GGCCGGATCG CGCCGGTCAG CCGGGAGATG ATCCTCAACT TCGTCGCGAT GCACTCCCTG
GGACTGCCCA AGTCCTATTG A
|
|---|
| Protein sequence | MSNFSESQER QELRKAVAKL AAKYGREWFT RKARSGEKTT ELWLEIGANG YLGINIPEEY
GGGGGGIGDI AAVCEELAAQ GCPLLLMVVS PAICGTIISR YGTPEQKQRW LPGICDGTGT
MAFAITEPDA GTNTHNITTT ARRDGDGWVL SGRKIYISGV DEADNMLVVA RTEDARTGKL
KPCLFVVPTD AEGLEAKAIA MEIVSPELQF AVFLDDVRLP ADALVGDEDG GLVQLFAGLN
PERIMAASFS TGLARHALDK ATTYAKERTV FQGPIGSHQA IAHPLAESHI EIEMARLMTQ
KAAALYDAGD DMGAGEAANM AKYAAAEAAC HAVDRAVQTH GGNGITQEYG VAGLLVASRA
GRIAPVSREM ILNFVAMHSL GLPKSY
|
|---|
| |