Gene Noca_4535 details

Gene Information

• Locus tag: Noca_4535
• ID: 4597054
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 4798838
• End bp: 4799440
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 639779146
• Product: RNA polymerase sigma factor SigK
• Protein accession: YP_925719
• Protein GI: 119718754
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.394166
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACCACA TCCGCTCCGT CGGCGCCGGC GCCCCGTCCC CCGAGGACGG GGCGCCCGGC 
GCCGACCTGG TCGAGCTGCT GCGGCGCTCG GCACGCGGCG ACGAGCAGGC GTTCGCTCGC 
CTGTACGACG CCACCGGCTC GCGCGTGCAC GGACTCGCGC TGCGGGTCGT GCGCGACCCG 
GCCCAGGCCG AGGAAGTGAC CCAGGAGGCG TTCCTGGAGA TCTGGCGCAC CGCCACCCGG 
TTCGACCCCG ACCGCGGCAG CCCGCTCGCC TGGCTGCTGA CGATCACCCA CCGCAAGGCG 
GTGGACCGGG TCCGGTCGGC GCAGGCGGCG ACCCGCCGCG ACACGACGTA CCACGAGCAG 
AACCAGCCGG TCGAGCACGA CGAGACCGCC GAGGCCGCGC ACGCGTCCCT CGAAGCCCAC 
CGGGTCCGCG GCGCGCTCGC GGCCCTCACC GAGGTGCAGC GCGAGGCCGT CGGCCTCGCC 
TACTTCGGCG GTTACACGCA CACGGAGGTG GCGACCATGC TCGACCTACC GGTCGGCACC 
GCCAAGACCC GCATCCGAGA CGGCTTGATC CGGTTGCGCG ACGCGATGGG AGTCGGGTCA 
TGA 

 

Protein sequence

MDHIRSVGAG APSPEDGAPG ADLVELLRRS ARGDEQAFAR LYDATGSRVH GLALRVVRDP 
AQAEEVTQEA FLEIWRTATR FDPDRGSPLA WLLTITHRKA VDRVRSAQAA TRRDTTYHEQ 
NQPVEHDETA EAAHASLEAH RVRGALAALT EVQREAVGLA YFGGYTHTEV ATMLDLPVGT 
AKTRIRDGLI RLRDAMGVGS