| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4103 |
|---|
| Symbol | |
|---|
| ID | 4596617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4334065 |
|---|
| End bp | 4335813 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639778709 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_925287 |
|---|
| Protein GI | 119718322 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGCAC TCTGGCCCCA GATCGCGGTG GGGTTCGGCC CCCAGCAGTC CTACTACGTC
GACCTGGCCA CGACCGCCCT GATCCTGACC ATGCTGGCCA TCTCGCTCAA CCTGGCGATG
GGCATCGCCG GGCTGCTCTC GTTCGTCCAC ACAGGGTTGC TGGCCGTCGC CGGCTACACC
CTGGGCATCT CGGCGCTTCG ATGGGGAGTC AACCCCTGGC TCGGGATCCT GCTGGGTGTC
GTCGTCACTG TCCTGTTCTG CATCCTGATC AGCCTGGTAT CGGCTCGCGC CACCAACATC
TACTGGGGCC TGATCACGTT GAGCTTCGAC CTGGTGCTCA TCCAGGTGAT CGAGCAGTGG
GGGTCGGTGA CCGGCGGCTT CAACGGCCTG CCCGGCGTCC CGCGCCCGCA GCTGAACGGT
GCCCCTCTCG ATACCCAGTC GTTCTACTAC CTGTGCCTGG TGATGGCGAT CGGCTGCTAC
CTGGTCACGA GGAACCTGGT GAAGTCGCCG GCCGGACGAG GGTTCCACGC GCTCCGTCAG
TCTCCGGAGA CCGCTTCCAG CCTGGGCATC AACGTTCCCG CCGCACGGCT GCTCGCCTTC
GCCATCGCCG GCGCCCTGGC AGGCTTCTCG GGCGCGCTGT TCGCGATGCA CCTGAACTTC
ATCAGTCCCG AGGTCGCCGA CCAGGGGCCC CAGCTGCCAC TGTTCATCGC GATCTTCCTC
GGAGGGTTCG GGACCCTGCT GGGTCCCGTG CTCGGCATGG TCGTCGTCAC CGCCGTTCAG
CACGAGCTGC GTGGCTCGGG TGAGAACGCG CAGCTGATCC TGGGACTCTT CTTGTTGGCC
TGCATTCTCA TCCTCCCCAA GGGCATCGTC GGCACCTGGA TGTCGACCAG GTTCGGACGT
TGGGTCAGTG TCGCCGCGCA TCCAGCGGTG CCGCCACCGG ACGAGTCCGA GTCCCTGGCG
CTCCTGCAGA ACAGCACGAG TGGCGCCGAG CCGGTGATGA GGTGCCAGGA CGTCGGCAAG
ATGTATGGCG GAGTGCGCGC CCTGGGCGGT GTCGACCTGG AGCTTTACCC GGGCGAGATC
CACGCGCTCA TCGGACCCAA CGGCGCTGGC AAGTCGACCA TGGCCGGCTG CATCACCGCC
CACATCCAAC GTGACTCCGG CACCGTGGTG GTCGGTGGGA GGCCGTTGCC CAAGCGCCCG
CACGCGGTGG CCAAGCGTGG GGTGACCCGC GTCTTCCAGG AGCCGCACCT CTTCGAGGGC
GGAACCGTGG AGGACAACGT CCTCACCGGC ATGTACGGCT GGGGCCGATC GGGCTGGCTG
CCAGCCATCG TGCGGACTCC CGGGTATCTG CGTGCCGAGC GCGAGCGTCG CCAGCAGGTC
CGGCTCCTCT TGCGCGCGGT CGGGCTCGAG AGCCTGGTCC ACCTGTCCGC GTCGTCGTTG
TCGCATGGCC AGAAGCGGCT GGTCGAGGTC GTCCGCGCCG TCGCGACCCG TCCGACCGTC
CTCATCCTGG ACGAGCCCGC GACGGGACTG ACGCCGGGTG ACCTCGCGCA ACTGGACAGC
CTGCTGCGCA CGCTCAGGCA GTTCGGGATC GCGCTCCTCC TGATCGAGCA CAACATGGGC
TTCGTCCTCC CGCTGTCCGA CCGGGTCACG GTTCTGAACT TCGGTGAGGT GATCGCCCAC
GGCACGCCGC AAGAGATCGT CGACTCTCCC GTCGTCCGGG AGGCCTACCT GGGAGGCGCG
ACCGTATGA
|
|---|
| Protein sequence | MLALWPQIAV GFGPQQSYYV DLATTALILT MLAISLNLAM GIAGLLSFVH TGLLAVAGYT
LGISALRWGV NPWLGILLGV VVTVLFCILI SLVSARATNI YWGLITLSFD LVLIQVIEQW
GSVTGGFNGL PGVPRPQLNG APLDTQSFYY LCLVMAIGCY LVTRNLVKSP AGRGFHALRQ
SPETASSLGI NVPAARLLAF AIAGALAGFS GALFAMHLNF ISPEVADQGP QLPLFIAIFL
GGFGTLLGPV LGMVVVTAVQ HELRGSGENA QLILGLFLLA CILILPKGIV GTWMSTRFGR
WVSVAAHPAV PPPDESESLA LLQNSTSGAE PVMRCQDVGK MYGGVRALGG VDLELYPGEI
HALIGPNGAG KSTMAGCITA HIQRDSGTVV VGGRPLPKRP HAVAKRGVTR VFQEPHLFEG
GTVEDNVLTG MYGWGRSGWL PAIVRTPGYL RAERERRQQV RLLLRAVGLE SLVHLSASSL
SHGQKRLVEV VRAVATRPTV LILDEPATGL TPGDLAQLDS LLRTLRQFGI ALLLIEHNMG
FVLPLSDRVT VLNFGEVIAH GTPQEIVDSP VVREAYLGGA TV
|
|---|
| |