| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4092 |
|---|
| Symbol | |
|---|
| ID | 4596606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4322810 |
|---|
| End bp | 4323850 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639778698 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_925276 |
|---|
| Protein GI | 119718311 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.357706 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATGA CCCAGGTCCC TGCTGCGCCG GCGGTCGACC AGGCCCCCGG TGCACTCGTC
GCCGCCGCGT CCGTCCACCG CGTGGGTGAG GTGGGGCTGC TCCGGCGGCT CGCGTCGCGC
CGGCTGTCGC TGCTGAGTCT CGTCGGTGTC GCCTTCTTCC TGCTGCTCGC GCTGATCGGT
CCCTTCTTCG CTCCCCATGG GCTCGGTGAG CTCGGCGACG ACGCGCTCGC TCCGCCGAGC
GTGGACCACT GGATGGGGAC GGACTCGGTC GGCCGCGACG TCTTCTCCCG GTTCCTCTAC
GGGTCGCGGA TCTCCATCCT GGTCGGCTTC GTGGCGGTCC TCGTGGCGAT GGCGCTCGGC
ACGTTGCTCG GCATGCTGGC CGGCATGCGC TCCGGAAAGG CCCGCGACAG CATCATCATG
CGGTTGATGG ACGTGATCTT GGCCTTCCCG CTGCTGGTCC TCGTCCCGGT GATCACAGGC
GTGATCGGTC AACGCGACCT GTCGCTCGGG CCGATCCCGA TCGGGCCGGA GGCACTGGTG
TCCGCGGCGA TCGGCGTCGT GCTGATCCCG GTCTTCGCCC GCATCGCCCG AGCCAGCGTC
CTGGCCGAGA TGCGTGAGGA CTACGTGCTC GCCGTCCGCT CGTTCGGAGG CCGCGGCCGT
GACGTCTTGT TCCGCAACCT GCTGCCCAAC ATCGCGGCCC CGCTGGTCGT GCAGGCGGCG
TTCGGCCTGG CGATGGCGGT CACCGTCGAG GCAGCGGTGT CGTTCCTGGG TCTCGGCGTC
CAGCCGCCGG GGGCGAGCTG GGGGACGATG CTCGCTGACG CCCGTCAGTA CGTCACGCTC
GGTGCGTGGT GGCTCGTGCT GTTCCCGTCC GTGGCCATCG CCCTGTTCGT GCTCGTCTTC
AACCTGCTGG GCGACCAGCT GCGTGACGAG CTGGACCCGC GCGCCAGGAC CGCGGCAGCT
GGACGGAGAC GCCGGTCGCG TGGCAAGGCG TCGGAGGAGC GGTCGCAGGT CGAGGAGGAC
GACACCGATG AGCACGCCTG A
|
|---|
| Protein sequence | MRMTQVPAAP AVDQAPGALV AAASVHRVGE VGLLRRLASR RLSLLSLVGV AFFLLLALIG
PFFAPHGLGE LGDDALAPPS VDHWMGTDSV GRDVFSRFLY GSRISILVGF VAVLVAMALG
TLLGMLAGMR SGKARDSIIM RLMDVILAFP LLVLVPVITG VIGQRDLSLG PIPIGPEALV
SAAIGVVLIP VFARIARASV LAEMREDYVL AVRSFGGRGR DVLFRNLLPN IAAPLVVQAA
FGLAMAVTVE AAVSFLGLGV QPPGASWGTM LADARQYVTL GAWWLVLFPS VAIALFVLVF
NLLGDQLRDE LDPRARTAAA GRRRRSRGKA SEERSQVEED DTDEHA
|
|---|
| |