Gene Noca_4060 details

Gene Information

• Locus tag: Noca_4060
• ID: 4596574
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 4285072
• End bp: 4286967
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639778666
• Product: GTP-binding protein TypA
• Protein accession: YP_925244
• Protein GI: 119718279
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0939929
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCCTACTA CCGCCCGCAC CGACCTCCGC AACGTGGCGA TCGTCGCCCA CGTCGACCAC 
GGCAAGACGA CGCTCGTCGA TGCGATGCTG CGCCAGGGCG GCGCGTTCAC CGAGCACCAG 
GCCGAGGGCG TCGCCGAGCG GGTGATGGAC TCCGGTGACC TCGAGCGCGA GAAGGGCATC 
ACGATCCTCG CGAAGAACAC CGCGATCCAC TACGCGGGCG CCGCCGCCGA GGGCCGGCCG 
ATGACGATCA ACATCATCGA CACCCCGGGC CACGCGGACT TCGGCGGCGA GGTCGAGCGC 
GGCCTGTCGA TGGTGGACGG GATCGTGCTG CTCGTCGACG CGTCCGAGGG CCCGCTGCCG 
CAGACCCGGT TCGTGCTGCG CAAGGCGCTC AACGCCGACA TGCCGGTCGT GCTCGTGGTC 
AACAAGGTCG ACCGCGGCGA CGCGCGGATC GAGGAGGTCG TCGACGAGAC CTACGAGCTG 
TTCATGGACC TGCTCGACGA GCACCACAGC CAGGACGCCC TGGACTTCCC CGTCGTCTAC 
GCGTCCGCGA AGTCCGGCCG GGCCTCACTG GAGATGCCGG AGAACGGCGG CCTTCCGGAC 
TCCCCCGACC TCGAGCCGCT GTTCAAGACG ATCCTCGAGA CGATCCCCGC GCCGACGTAC 
ACCGAGGGCG CGCCGCTGCA GGCGCACGTC ACCAACCTGG ACGCCTCGCC GTTCCTCGGC 
CGGCTCGCGC TGGTGCGCGT CCACGAGGGC ACCCTGCGCA AGGGCCAGCA GGTGGCCTGG 
ATGAAGCGCG ACGGCTCGAC GAAGAGCGTG AAGATCACCG AGCTGCTGGT CACCGAGGGC 
CTCGAGCGCA AGCCGGGCGA GTCCGCGGGC CCGGGCGACA TCGTCGCGGT CGCGGGGATC 
CCGGAGATCA CGATCGGTGA GACGCTGGCC GACGCCGAGA ACCCGGTCGC GCTGCCGCTG 
ATCCACGTCG ACGAGCCCGC GATCTCGATG ACGATCGGCA CCAACACCTC ACCGCTGGTC 
GGCAAGGGCG GCAAGGGTCA CAAGGTCACG GCCCGGCTGG TCAAGGACCG GCTCGACGCG 
GAGCTGGTCG GCAACGTGTC GCTCAACGTG CTGCCCACCG AGCGTCCCGA CGCGTGGGAG 
GTGCAGGGCC GTGGTGAGCT GGCGCTGGCG ATCCTGGTCG AGCAGATGCG CCGCGAGGGC 
TACGAGCTGA CCGTCGGCAA GCCGCAGGTG GTCACCAAGG AGATCGACGG CAAGCTCCAC 
GAGCCCGTCG AGCGGCTGAC CATCGACGCG CCGGAGGAGT ACCTCGGCAC GATCACCGAG 
ATGCTCGCGA CCCGCAAGGG CCGGATGGAG CAGATGACCA ACCACGGCAC CGGCTGGGTG 
CGGATGGAGT TCCTGGTGCC GGCCCGTGGG CTGATCGGGT TCCGGACCGA GTTCCTCACC 
GCGACCCGCG GCACCGGCAT CGCCCACCAC ATCTCCGAGG GCTACGAGCC GTGGGCCGGC 
GAGATCCGCT CGCGCGCGTC CGGCTCGCTG GTCGCCGACC GGTCGGGCGC GGCGACGGCG 
TACGCCATGA CGTCGCTGCA GGAGCGCGGC GTGCTGTTCG TCGACCCGAC CACCGAGGTC 
TACGAGGGCA TGATCGTCGG CGAGAACTCG CGCGCCGACG ACATGGACGT GAACATCACC 
AAGGAGAAGC AGCAGACGAA CATCCGCTCC TCCACGTCCG ACAACTTCGA GAAGCTGGTG 
CCGCCGCGCA AGCTCTCGCT CGAGCAGTGC TTGGAGTTCT GCCGCGAGGA CGAGTGCGTC 
GAGGTCACCC CGGAGACGGT GCGGATCCGC AAGGTCGTCC TCGACCAGAA CGCCCGGGCG 
AAGTCGGCGA GCCGGGCGCG CAAGGCGAGC AGCTAG 

 

Protein sequence

MPTTARTDLR NVAIVAHVDH GKTTLVDAML RQGGAFTEHQ AEGVAERVMD SGDLEREKGI 
TILAKNTAIH YAGAAAEGRP MTINIIDTPG HADFGGEVER GLSMVDGIVL LVDASEGPLP 
QTRFVLRKAL NADMPVVLVV NKVDRGDARI EEVVDETYEL FMDLLDEHHS QDALDFPVVY 
ASAKSGRASL EMPENGGLPD SPDLEPLFKT ILETIPAPTY TEGAPLQAHV TNLDASPFLG 
RLALVRVHEG TLRKGQQVAW MKRDGSTKSV KITELLVTEG LERKPGESAG PGDIVAVAGI 
PEITIGETLA DAENPVALPL IHVDEPAISM TIGTNTSPLV GKGGKGHKVT ARLVKDRLDA 
ELVGNVSLNV LPTERPDAWE VQGRGELALA ILVEQMRREG YELTVGKPQV VTKEIDGKLH 
EPVERLTIDA PEEYLGTITE MLATRKGRME QMTNHGTGWV RMEFLVPARG LIGFRTEFLT 
ATRGTGIAHH ISEGYEPWAG EIRSRASGSL VADRSGAATA YAMTSLQERG VLFVDPTTEV 
YEGMIVGENS RADDMDVNIT KEKQQTNIRS STSDNFEKLV PPRKLSLEQC LEFCREDECV 
EVTPETVRIR KVVLDQNARA KSASRARKAS S