Gene Noca_4024 details

Gene Information

• Locus tag: Noca_4024
• Symbol: ispF
• ID: 4596538
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 4250519
• End bp: 4251013
• Gene Length: 495 bp
• Protein Length: 164 aa
• Translation table: 11
• GC content: 78%
• IMG OID: 639778630
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_925208
• Protein GI: 119718243
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.921291
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGATCTCC TCCCCCGGGT CGGCATCGGC ACCGACGTGC ACCGGCTCGT CGACGGCGTC 
CCCCTGCACC TCGCGGGCCT GCACTGGCCC GACGAGCCGC AGGGCCTCGA GGGTCACTCC 
GACGCCGACG TGGCCGCCCA CGCCGCCTGT GACGCGCTGT TCTCCGCGGC CGGCCTCGGC 
GACCTCGGCT CCAACTTCGG TACGGCGGAC CCGGCCTGGG CCGGCGCGTC CGGCGCGGCC 
CTCCTCGAGG AGACGGCGCG CCGGGTCCGG GCCGCGGGCT TCGAGATCGG CAACGTCGCG 
GTGCAGGTGA TCGGCAACCG CCCCCGCCTC GGTGGGCGCC GGGCGGAGGC CGAGACCGCC 
CTGAGCGCCG CCGTGGGCGC GCCGGTGAGC GTCTCGGCCA CCACCGCCGA CGGGCTCGGC 
CTGACGGGAC GCGGCGAGGG CGTCGCCGCG ATCGCGACCG CCCTGGTCAC GCCCCGTCAC 
CACGGGTCGG CGTGA 

 

Protein sequence

MDLLPRVGIG TDVHRLVDGV PLHLAGLHWP DEPQGLEGHS DADVAAHAAC DALFSAAGLG 
DLGSNFGTAD PAWAGASGAA LLEETARRVR AAGFEIGNVA VQVIGNRPRL GGRRAEAETA 
LSAAVGAPVS VSATTADGLG LTGRGEGVAA IATALVTPRH HGSA