| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_4005 |
|---|
| Symbol | |
|---|
| ID | 4598140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 4227158 |
|---|
| End bp | 4228795 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639778610 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_925189 |
|---|
| Protein GI | 119718224 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA CGCCGTACAA GAACGAGGCC GACTACGTGG TGGTCGGCTC CGGCAGCTCG
GGCGCCGCGA TCGCCGGCCG GTTGGCCCAG TCCGGCGCGA GCGTGATCGT GCTCGAGGCC
GGCAAGAGCG ACGAGCAGTA CCTGGTGAAG AAGCCCGGCA TGATCGGCCC GATGCACTCG
GTGCCCGAGA TCAAGAAGCG CGTCGACTGG GGCTACTACT CCACGCCGCA GAAGCACCTC
CTGGAGCGCA AGATGCCGGT CCCGCGCGGC AAGGTGGTCG GCGGCTCGAG CTCGATCAAC
GGCATGGTCT ACGTGCGCGG CAACCGCGCC AACTACGACT CCTGGGCAGC CGAGGGCTGC
ACCGGCTGGT CGGCCGACGA GGTCAACGCG GCGTACCGGC GCATGGAGGA CTTCGAGGAC
GGCGCCAACG ACTACCGCGG TGCGGGCGGG CCGATCAAGG TGACCCGCAA CGCCGCGCCG
CAGGAGGGCT CCCTGCAGTT CATCCAGGCG ACCTCGGACG TGCTGGGCGT GAAGGTCCTC
GACGACTACA ACGCCGAGTC GCAGGAGGGG GTCAGCCGGA TGCAGCAGAA CGCCGCCGGC
GGGCTGCGCT ACAGCGCGTC GCGGGGCTAC CTCCACCACC TCGACGTACC CACCCTGCAG
CTGCAGACCG AGGTGCTGGT GAGGAAGGTC GTCATCGAGA ACGGGCGGGC GACGGGCGTC
GAGGTCACCG ACAAGAGCGG CAGCCGGCGT ACCGTCCGGG CCGGCAAGGA GGTCATCCTC
TCGGCCGGCT TCGTCGGGTC CGCGCAGCTC CTGATGCTCT CCGGCATCGG CCCCGCCCAG
CACCTGCGCG ACCACGGCAT CGAGGTGCTC GCGGACCTGC CGGTGGGCGA CAACCTGCAC
GACCACATGT TCCACGCGCT GACCTTCCAC GTGACCTCCT CGAAGATGCG CGGGAACGCC
TTCTTCTTCG GCAAGGGCGT CCTCAAGGAG GCGCTGCGCC CCGGCAGGAC GTTCATGGCG
AACTCGGTGT TCGAGGCCGT CGCGTTCCTG CGTACGTCGC AGGCGACCGA CGTGCCCGAC
CTGCAGCTGC ACCTGCTGCC GTGGTCCTAC GTCTCGCCCA ACCAGGACGA GCCGATCCGC
CACGACGTCG ACCCGCGTAC GTCGATCACG CTGCTCTCGA CGCTGATCTA CCCGCGCAGC
CGCGGCACGT TGCGGCTCGC GTCCGACGAC CCGACCACCC CACCGCTGAT CGACTTCCAG
TACCTCGCCG ACCCCGGCGA CCTGGAGGTG CTCGCGGAGG GTTCGGAGAT GGTCCGGGAG
ATCATGGCCG GCGCCGCGTT CGGCGGTGCG GTCAAGGAGG AGATCCATCC GGGGGCCCGC
CTGAAGGGGC AGGAGCTGCG CGACGCGATC CTCAACCGGG CGACCTCGGT CTACCACGGC
GTCGGCACCT GCCGGATGGG CACCGACGAC CTGTCGGTCG TGACCCCCGA CCTCAAGGTC
CGCGGCGTCG AGAACCTCCG GGTCTGCGAC GCCTCGATCA TGCCGTCGAT CACCGGGGGC
AACACCAACG CGCCCGCGAT CATGATCGGT GAGCGCGGCG CGGACCTCGT TCTCGGCACC
GTTCTCGGAA GGGCGTGA
|
|---|
| Protein sequence | MAKTPYKNEA DYVVVGSGSS GAAIAGRLAQ SGASVIVLEA GKSDEQYLVK KPGMIGPMHS
VPEIKKRVDW GYYSTPQKHL LERKMPVPRG KVVGGSSSIN GMVYVRGNRA NYDSWAAEGC
TGWSADEVNA AYRRMEDFED GANDYRGAGG PIKVTRNAAP QEGSLQFIQA TSDVLGVKVL
DDYNAESQEG VSRMQQNAAG GLRYSASRGY LHHLDVPTLQ LQTEVLVRKV VIENGRATGV
EVTDKSGSRR TVRAGKEVIL SAGFVGSAQL LMLSGIGPAQ HLRDHGIEVL ADLPVGDNLH
DHMFHALTFH VTSSKMRGNA FFFGKGVLKE ALRPGRTFMA NSVFEAVAFL RTSQATDVPD
LQLHLLPWSY VSPNQDEPIR HDVDPRTSIT LLSTLIYPRS RGTLRLASDD PTTPPLIDFQ
YLADPGDLEV LAEGSEMVRE IMAGAAFGGA VKEEIHPGAR LKGQELRDAI LNRATSVYHG
VGTCRMGTDD LSVVTPDLKV RGVENLRVCD ASIMPSITGG NTNAPAIMIG ERGADLVLGT
VLGRA
|
|---|
| |