Gene Noca_3890 details

Gene Information

• Locus tag: Noca_3890
• Symbol: rplF
• ID: 4598025
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 4103346
• End bp: 4103885
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639778496
• Product: 50S ribosomal protein L6
• Protein accession: YP_925075
• Protein GI: 119718110
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCGTA TTGGCAAGCT CCCCGTCGCG GTCCCGTCGG GTGTCGACGT CGCGATCGAC 
GGCGCACGGG TGACCGTCAA GGGCCCCAAG GGCACCCTGT CGCACACCGT GGCCGCACCG 
ATCACGGTCG AGAAGGGCGA CGGCGTCCTG GACGTCAAGC GACCCGACGA CGAGCGCGAG 
AGCAAGGCGC TCCACGGCCT GACCCGCACC CTGGTCAACA ACATGGTGGT GGGCGTGACC 
GAGGGCTACG AGAAGAAGCT CGAGATCGTG GGCGTGGGCT ACCGCGTCCT GTCGAAGGGG 
CCGACCCAGC TGGAGTTCCA GCTCGGGTAC TCCCACCCGA TCACCTTCAA CGCCCCCGAG 
GGCATCACCT TCGCGGTCGA GGGCCCCACC CGGCTCGGCG TCCAGGGCAT CGACAAGCAG 
CTCGTCGGTG AGGTAGCCGC GAACATCCGC AAGCTGCGCA AGCCCGAGCC GTACAAGGGC 
AAGGGCGTTC GCTACGCGGG TGAGCACATC CGCCGCAAGG TCGGAAAGGC CGGTAAGTGA 

 

Protein sequence

MSRIGKLPVA VPSGVDVAID GARVTVKGPK GTLSHTVAAP ITVEKGDGVL DVKRPDDERE 
SKALHGLTRT LVNNMVVGVT EGYEKKLEIV GVGYRVLSKG PTQLEFQLGY SHPITFNAPE 
GITFAVEGPT RLGVQGIDKQ LVGEVAANIR KLRKPEPYKG KGVRYAGEHI RRKVGKAGK