Gene Noca_3876 details

Gene Information

• Locus tag: Noca_3876
• Symbol: rpsD
• ID: 4598011
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 4094017
• End bp: 4094625
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639778482
• Product: 30S ribosomal protein S4
• Protein accession: YP_925061
• Protein GI: 119718096
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCGTT ACACCGGACC CATGACCAAG AAGTCGCGCC GCCTCGGTGT CGACCTCGTC 
GGTGGCGACT CGGCTTACGA GCGTCGCCCC TACCCCCCCG GCCAGCACGG CCGCGGCCGG 
ATCAAGGAGA GCGAGTACCT CCTCCAGCTC CGGGAGAAGC AGAAGGCGCG CTTCACCTAC 
GGCGTCCTCG AGAAGCAGTT CCACAACTAC TACACCGAGG CCTCGCGTCG CGCCGGGAAG 
ACCGGTGACA ACCTGCTCCA GCTGCTGGAG TGCCGCCTCG ACAACGTGGT CTACCGCGCC 
GGCTTCGCCC GGACCCGTCG CCACGCCCGT CAGCTCGTGA CGCACGGCCA CTTCAAGGTG 
AACGGCAAGA AGGTCGACAT CCCGTCCTTC CAGGTCACCG CGCACGACGT CATCGACGTC 
CGCGAGAAGT CGCTGGAGAT GACCCCGTTC ATCGTGGCGC GCGAGACCCA CGGCGAGCGC 
GTCGTGCCCG CGTGGCTCGA GGCGATCCCG TCGCGGATGC GGGTCCTGGT CCACCAGCTC 
CCCGTGCGCG CGCAGATCGA CATCCCGGTC CAGGAGCAGC TCATCGTCGA GTACTACTCC 
AAGAAGTAG 

 

Protein sequence

MARYTGPMTK KSRRLGVDLV GGDSAYERRP YPPGQHGRGR IKESEYLLQL REKQKARFTY 
GVLEKQFHNY YTEASRRAGK TGDNLLQLLE CRLDNVVYRA GFARTRRHAR QLVTHGHFKV 
NGKKVDIPSF QVTAHDVIDV REKSLEMTPF IVARETHGER VVPAWLEAIP SRMRVLVHQL 
PVRAQIDIPV QEQLIVEYYS KK