| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3869 |
|---|
| Symbol | |
|---|
| ID | 4598004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 4088066 |
|---|
| End bp | 4089199 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 639778475 |
|---|
| Product | sigma-70 region 2 domain-containing protein |
|---|
| Protein accession | YP_925054 |
|---|
| Protein GI | 119718089 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAGGAGC TGGTCCGGGA GCTGGTGCCC CAGGTCCTCG GTGTCCTCGT CCGTCGCGGA
GCCGACTTCG CGTCGGCCGA GGACGCCGTC CAGGAGGCGC TCGTCGAGGC GGTACGCCGC
TGGCCGGACG CGCCGCCGGA CGACCCGAAG GCATGGCTGG TCACGGTGGC CTGGCGCAAG
GTCGTCGACG CCGGGCGCTC CGAGTCGGCG CGCCGGGCCC GCGAGGAGCG CGTGCACGAG
GAGCCGGCGC CGGGACCCGC GGCGGGGCAG GACGACACCC TGCTGCTGCT GTTCCTGTGC
TGCCACCCCG CGCTCAGCCC GTCCTCGGCG GTCGCGCTCA CGCTGCGCGC GGTCGGCGGG
CTGACCACCC GGCAGATCGC CGCGGCGTAC CTCGTGCCGG AGGCGACGAT GGCCCAGCGG
ATCAGCCGGG CGAAGCGCAC GGTCGCCGAC GCCGGCGTCG GCGCACCCGG TGACCTGCGG
CGGGTGCTGA CCGTGCTGTA CGTGGTGTTC AACGAGGGCT ACTCCGGCGA CGTCGACCTC
GCGGCCGAGG CGATCCGCCT GACCCGGATG CTCGCCGAGG CGAGCGACGA GCCCGAGGTC
GCCGGCCTGC TCGCGCTGAT GCTGCTCCAC CACGCCCGCC GCGCCGCCCG CTGGACCGAG
CAGGGCGCGC TGGTGCCGCT CGCCGAGCAG GACCGCAGCC GCTGGGACAC CGCGCTGGTC
GCCGAGGGGG TCGAGATCCT GCAGGCCGCG CTCGCCCGCG ACCGGCTCGG GGAGTACCAG
GCCCAGGCCG CGATCGCCGC CCTGCACTGC GACGCCCGCT CGACGGAGGA GACCGACTGG
CCGCAGGTCC TGGAGTGGTA CGACGAGCTG CTCGGCCTCA CCGACTCACC CGTGGTCGCC
CTCAACCGGG TGGTCGCGGT CGGCGAGGTC GACGGACCCT TGGTCGGCCT CCGCGAGCTG
GCGTCGGTGC CGGCGGACGT GCCGCGTCGT ACCGCCGTCG AGGCGTGGCT GCACGAGCGC
GCCGGCGACA CCGCCCTCGC GGGCCGGCTC TACGCGGCGG CCGCGGCCGC CGCGAGCAGC
GCCGTCGAGC GCGACCACCT CACCCGACAG GCGGCTCGGC TGCGGCACGA CTGA
|
|---|
| Protein sequence | MEELVRELVP QVLGVLVRRG ADFASAEDAV QEALVEAVRR WPDAPPDDPK AWLVTVAWRK
VVDAGRSESA RRAREERVHE EPAPGPAAGQ DDTLLLLFLC CHPALSPSSA VALTLRAVGG
LTTRQIAAAY LVPEATMAQR ISRAKRTVAD AGVGAPGDLR RVLTVLYVVF NEGYSGDVDL
AAEAIRLTRM LAEASDEPEV AGLLALMLLH HARRAARWTE QGALVPLAEQ DRSRWDTALV
AEGVEILQAA LARDRLGEYQ AQAAIAALHC DARSTEETDW PQVLEWYDEL LGLTDSPVVA
LNRVVAVGEV DGPLVGLREL ASVPADVPRR TAVEAWLHER AGDTALAGRL YAAAAAAASS
AVERDHLTRQ AARLRHD
|
|---|
| |