Gene Noca_3840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_3840 
Symbol 
ID4595905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp4061142 
End bp4061930 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content71% 
IMG OID639778446 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_925025 
Protein GI119718060 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGCGC GCATGGACAT CAACGGAGCC AGTGCCATCG TCACGGGTGG GGCGTCGGGC 
ATCGGCGCGG CCGCCGCTCG TCAGCTCGCC GAGAAGGGCG CGGTCGTCGT GGTCGCCGAC
CTGCAGGCCG ACAAGGGCGA GGCGCTCGCC CAGGAGATCG GGGGCGTCTT CGCCCGGGTC
GACGTCACCG ACACCGACCA GATCCGCGCG GCCGTCGAGG CCGCCGCCCA GATCGCCCCG
CTGCGCGCGT GCGTCAACTC CGCCGGCATC GGCTGGGCGC AGCGCACCAT CGGCCGCGAC
GGCGAGTTCG ACTCCGCGCA CGACCTGGAA GCCTTCCGCA AGGTGATCGC GATCAACCTG
ATCGGCACCT TCGACATGGT CCGGCTCGCC GCGACCGCCA TGAGCCGCAA CGAGCCGGAC
CAGGACGGCT GTCGCGGCGC GATCGTCAAC CTCGCCAGCG TGGCCGCCTT CGACGGCCAG
ATCGGGCAGG CGTCGTACTC CGCCTCCAAG GGCGGGGTCG TCGGCATGAC CCTGCCCGTC
GCCCGGGATC TCTCCGCCGC CGGCATCAGG CTCAACACGA TCGCTCCGGG CCTGATCGAC
ACCCCGATCT ACGGCGAGGG CGAGGCCGCG GAGGCGTTCA AGGCCAAGCT CGGCGAGAGC
GTGCTGTTCC CCAAGCGCCT CGGCGTGCCG GACGAGCTGG CCAGCATGGT CGTCGAGTGC
ATCACCAACA GCTACCTGAA CGCCGAGGTG ATCCGCGTCG ACGGCGGCAT CCGGATGCCC
CCCAAGTAG
 
Protein sequence
MLARMDINGA SAIVTGGASG IGAAAARQLA EKGAVVVVAD LQADKGEALA QEIGGVFARV 
DVTDTDQIRA AVEAAAQIAP LRACVNSAGI GWAQRTIGRD GEFDSAHDLE AFRKVIAINL
IGTFDMVRLA ATAMSRNEPD QDGCRGAIVN LASVAAFDGQ IGQASYSASK GGVVGMTLPV
ARDLSAAGIR LNTIAPGLID TPIYGEGEAA EAFKAKLGES VLFPKRLGVP DELASMVVEC
ITNSYLNAEV IRVDGGIRMP PK