| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3692 |
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| Symbol | |
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| ID | 4597609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 3914828 |
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| End bp | 3918676 |
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| Gene Length | 3849 bp |
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| Protein Length | 1282 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639778300 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_924879 |
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| Protein GI | 119717914 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.227256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGAGG AGCTCCAGAT CGCCTACCCT CCGGAGCTGC CGGTCACCCA GCGCCGCGAG
GACATCGCCG CCGCCATCCG CGACCACCAG GTCGTGATCG TGGCGGGCGA GACCGGGTCG
GGCAAGACGA CCCAGCTGCC GAAGATCTGT CTCGAGCTCG GGCGTGGCTC GACGGGCCTG
ATCGGGCACA CCCAGCCCCG CCGGATCGCG GCGCGATCCG TGGCGGAGCG GATCGCGAGC
GAGCTGGGGA CCGAGCTCGG GGACCTGGTC GGCTACCAGG TCCGGTTCAC CGACCGGACC
TCGCGGAAGA GCCGCGTGAA GCTGATGACC GACGGCATCC TGCTCGCCGA GCTGCAGCGC
GACCGGCAGC TGCGCCGGTA CGACACCATC ATCATCGACG AGGCCCACGA GCGGAGCCTC
AACATCGACT TCTTGCTCGG CTACCTCAAG CGGCTGCTGC CGAAGCGGCC GGACCTCAAG
CTGATCATCA CGTCGGCGAC CATCGACGTC GACCGGTTCG CGAAGCACTT CGACGCTCCC
GTCGTCGAGG TCTCCGGGCG GACCTACCCG GTCGAGATCC GCTACCGGCC GCTGATGGCG
TTCGCCCCAG GTGAGCAGAG CGAGGACGAC GAGGGCGAGG TGATCGTCCG GGACCAGACC
GAGGCGATCG TCGAGGCGAT CAAGGAGCTC TCGGGGGAGG GACCCGGCGA CGTCCTCGTC
TTCCTCCCCG GCGAGCGCGA GATCCGCGAC ACCGCCGACG CGCTGGGGGA CCTGCCGCGG
ACCGAGATCC TGCCGCTCTT CTCCCGGCTG TCCGCCGCCG ACCAGCACCG GGTCTTCTCC
TCCCACGGCA ATGCGACCCG CCGGGTGGTG CTTGCGACCA ACGTGGCGGA GACGTCGCTG
ACGGTCCCTG GCATCCGGTA CGTCGTGGAC ACCGGCGTCG CGCGGATCAG CCGCTACTCG
GTGCGCACCA AGGTCCAGCG GCTGCCCATC GAGCCGATCA GCCAGGCCTC CGCCAACCAG
CGCTCCGGCC GGTGCGGCCG CGTCGAGGCC GGCATCGCGA TCCGGCTCTA CTCCCAAGAG
GACTTCGAGG GCCGCCCGGA GTTCACCGAC CCCGAGATCC TGCGCACCAA CCTGGCCAGC
GTCATCCTCC AGATGACGAG CCTCGGCCTC GGCGACCTGG CCCGCTTCCC GTTCGTCGAG
CCGCCCGACC GGCGCAACGT CCAGGCCGGC GTGCAGCTGC TCGAGGAGCT CGGCGCGCTG
TCCACGGCGG CCGAACCGAC CGCTCGTCCG CCGGAGCGAG CGGCGAAGGC CCGTGGCCCG
CGCCTCACCA GGATCGGTCA ACGGCTGGCC CGGCTGCCGA TCGACCCCCG GCTGGCCCGG
ATGATCCTCG AGGCCGAACG ACTCGGCTGC GTGCGCGAGG TGATCGTGAT CGCCGCCGCC
CTCTCGCTGC AGGACCCGCG GGAGCGGCCG GGCGCCGACC ACCCGAAGGA GCAGGCGCAG
GCCGACCAGC TGCATGCACG GTTCAAGGCC GAGGCGAGCG ACTTCCTCAC CTGGCTCAAC
CTCTGGCGCT ACCTCAAGGA GCAGCAGAAG GAGCTGTCCT CCTCGGCGTT CCGCCGGATG
TGCAAGCGCG AGTTCCTCAA CTACCTGCGG GTGCGCGAGT GGCAGGACTT CGAGTCCCAG
CTGCGCCAGG TCTGCAAGGA AGTCGGTCTG ACCATCGGCC CCGAGCGGCA ACGTCGCTCG
GTGGCCGAGG GTCAGACCTT TCAGGTGGTC ACGGAGGATG CGGACGGCAT CCACCAGGCG
CTGCTCTCGG GGTTGCTCTC CCACATCGGG CTGCTCGAGG AGCGGGAGAA GGAGCGTCGC
GGCCCGCGTG AGTACCTCGG CGCCCGCGGC GCACGGTTCG CGATCTTCCC GGGCAGCGGG
CTGCATCGGA AGAACCCCCA GTTCCTGATG GCCGGCGAGC TCGTCGAGAC CAGCCGGCTC
TGGGCCCGGC AGAACGCCGC GATCAAGCCG GAGTGGGCCG AGCGGCTCGG CGCGCACCTG
GTCAAGCGCA CCTACTCCGA GCCGCACTGG AGCAAGAAGC GGGCCTCGGT GATGGCCTTC
GAGCGGGTCA CGCTGTACGG CGTCCCGCTG GTCGCGGACC GCCCCGTGGC GTACGGCAAG
GTGGACCCCG CCCTGGCCCG TGAGCTGTTC ATCCGGCACG CGCTGGTCTA CGGCGAGTGG
GCTGCGGCCG AGCAGGGCAG CCACAAGTTC CTGGAGACCA ACCGCCGGCT GCTCGAGGAG
GCCGAGGAGC TCGAGCACCG GGCCCGGCGT CGCGACATCG TCGTCGACGA GCACACCCTG
TTCGACTTCT ACGACGCGCG CGTGGGCGCG GACGTGGTCA GCGGCGCCCA CTTCGACCAG
TGGTGGAAGC GCGAGAGGCA GCGCAACGGG CGGCTGCTGA CCTTCGACCC CGCGATGCTC
ACCCACGACA CCGTCGAGGA GGTCAGCGCC GCCGACTACC CCGAGCAATG GGAAGGTGCG
GGCCTGACCT TCCCGATCAG CTACCACTTC GAGCCCGGCG CGGCCGAGGA CGGCCTCACG
ATCGAGGTGC CCGTGGCGAC CCTCAACCGG GTCGAGGCCG ACGACTTCTC CTGGAACGTT
CCGGGCCTGC GCGAGGAGCT GGTCACCAGC CTGATCCGCA GCCTCCCCAA GAACCTGCGG
GTCAGCTTCG TGCCCGCGCC CAACAAGGCC CGGGAGTTCC TGGCCGCGGT CCCGCCGGGC
GAGGAGCCGC TCCTCGACGC GCTCGAGCGC TGGTGCCGCT CGACCACCGG CGTCGTCGTC
CCGCGTGAGG CATGGGACTG GGGCAAGGTG CCCGAGCACC TGCGGCCGAC GTACCGTGTC
GTCGACGACG CCGGCCGCGA GCAGGCCCGC GGCAAGGACC TCGAGGCGCT CAAGGCGCCG
CTGCGCCCGA CCTTCGCCGC GGCCATCGCG GAGGTCGCCG GCGACAGCGG CCTGGCCCGC
ACCGGTGAGA CGACCTGGGC GTTCGGTGAG GTCCCGAGCA GCCACACCGA GCGTCGCGCC
GGCCACGAGG TCCAGGTCTA CCCGGCGCTC GTCGATGAGG GCAGCGCCGT CGGGCAGCAG
GTCTTCGGGT CCACGGAGGA GCAGGAGGCG CGGCACCGCC TCGGCGTCCG CCGGCTGCTG
CTCCTCGAGC TCGACTCGCC GGTCAAGCGC GTCCTCGACG GGCTCACGAA TGCGGAGAAG
CTGGGTCTCG CGGGCTCGCC GTACCCCAGC GTCGCGGAGC TGCTCGAGGA CTGCCGCGCG
GCCGTGGTCG GCGCCGCCGT CGACGCGCGG CCGCCCGTGC GCGACGAGGC GGCGTACGTC
GCCCTGCGTG CCGAGGCCGC CCGCGACCAG GAGGCCCACC TGCGGGCCGT GATGGGAGAC
GTGATCCGGG TCCTGGACGC CTGGCGCCGG ACCGAGAAGG CGCTCAGCGG TCGCGCGGAC
CTGCCGCTGC TGCCCGCGCT CACCGACATG CGCGCGCAGC TGGGCCGGTT GGTGCACCGC
GGGTTCGTCG GCGAGGCGGG CGCGGCCCAG CTGCGGCGCT ACCCCGTGTA CCTCACCGCC
CTCGAGCAGC GCCGCGAGCG GCTGCCCGGA CAGGTGAACC GCGACCGGCA GCTGATGGAC
CAGCTCACCG AGCTCCAGGA CGCCTACCTG CACCGTCTCG AGGCGCTCCC GCCGGGCCGA
CCGCCCGGGG AGCGGCTGCG ACAGGTCCGC TGGATGCTCG AGGAGTACCG CGTCTCGCTG
TGGGCCCAGC AGCTCGGCAC GCCGTACCCG GTCAGCGACC AGCGCATCCG ACGCAGCCTG
ACCCCGTAA
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| Protein sequence | MSEELQIAYP PELPVTQRRE DIAAAIRDHQ VVIVAGETGS GKTTQLPKIC LELGRGSTGL
IGHTQPRRIA ARSVAERIAS ELGTELGDLV GYQVRFTDRT SRKSRVKLMT DGILLAELQR
DRQLRRYDTI IIDEAHERSL NIDFLLGYLK RLLPKRPDLK LIITSATIDV DRFAKHFDAP
VVEVSGRTYP VEIRYRPLMA FAPGEQSEDD EGEVIVRDQT EAIVEAIKEL SGEGPGDVLV
FLPGEREIRD TADALGDLPR TEILPLFSRL SAADQHRVFS SHGNATRRVV LATNVAETSL
TVPGIRYVVD TGVARISRYS VRTKVQRLPI EPISQASANQ RSGRCGRVEA GIAIRLYSQE
DFEGRPEFTD PEILRTNLAS VILQMTSLGL GDLARFPFVE PPDRRNVQAG VQLLEELGAL
STAAEPTARP PERAAKARGP RLTRIGQRLA RLPIDPRLAR MILEAERLGC VREVIVIAAA
LSLQDPRERP GADHPKEQAQ ADQLHARFKA EASDFLTWLN LWRYLKEQQK ELSSSAFRRM
CKREFLNYLR VREWQDFESQ LRQVCKEVGL TIGPERQRRS VAEGQTFQVV TEDADGIHQA
LLSGLLSHIG LLEEREKERR GPREYLGARG ARFAIFPGSG LHRKNPQFLM AGELVETSRL
WARQNAAIKP EWAERLGAHL VKRTYSEPHW SKKRASVMAF ERVTLYGVPL VADRPVAYGK
VDPALARELF IRHALVYGEW AAAEQGSHKF LETNRRLLEE AEELEHRARR RDIVVDEHTL
FDFYDARVGA DVVSGAHFDQ WWKRERQRNG RLLTFDPAML THDTVEEVSA ADYPEQWEGA
GLTFPISYHF EPGAAEDGLT IEVPVATLNR VEADDFSWNV PGLREELVTS LIRSLPKNLR
VSFVPAPNKA REFLAAVPPG EEPLLDALER WCRSTTGVVV PREAWDWGKV PEHLRPTYRV
VDDAGREQAR GKDLEALKAP LRPTFAAAIA EVAGDSGLAR TGETTWAFGE VPSSHTERRA
GHEVQVYPAL VDEGSAVGQQ VFGSTEEQEA RHRLGVRRLL LLELDSPVKR VLDGLTNAEK
LGLAGSPYPS VAELLEDCRA AVVGAAVDAR PPVRDEAAYV ALRAEAARDQ EAHLRAVMGD
VIRVLDAWRR TEKALSGRAD LPLLPALTDM RAQLGRLVHR GFVGEAGAAQ LRRYPVYLTA
LEQRRERLPG QVNRDRQLMD QLTELQDAYL HRLEALPPGR PPGERLRQVR WMLEEYRVSL
WAQQLGTPYP VSDQRIRRSL TP
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