Gene Noca_3548 details

Gene Information

• Locus tag: Noca_3548
• Symbol: sdhA
• ID: 4595730
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 3761334
• End bp: 3763199
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 639778156
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_924735
• Protein GI: 119717770
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.364565
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAAC CCCAGACCAG ACACCCGATG ACGGGCAACG AGATGTCCGG CGCCGAGGCC 
GGCGGCCTGG AGCGGCACCG GTACGACGTG GTCGTGGTCG GCGCCGGCGG GGCGGGGCTG 
CGCGCGGCGA TCGCCGCGCA CGAGACGGGC GCGCGCACCG CGATCGTGTG CAAGTCCCTG 
CTCGGCAAGG CGCACACGGT GATGGCCGAG GGCGGCATCG CGGCGGCGAT GGGCAACCGC 
TGGCCCGAGG ACAACTGGGA GGTGCACTTC CGCGACACCA TGCGTGGCGG AAAGATGCTC 
AACAACTGGC GGATGGCCCA GCTGCACGCC CAGGAGGCCC CCGAGCGGGT GATGGAGCTC 
GAGGACTGGG GCGCCCTGTT CGACCGGACC GACGACGGGC TGATCTCGCA GCGCGACTTC 
GGTGGCCACA AGTACGCCCG CCTCGCCCAC GTCGGCGACC GCACCGGCCT GGAGATGATC 
CGCACCCTCC AGCAGCGCGC CGTGGCGCTC GGCATCGACG TGTTCATGGA GTGCACGGTC 
ACCGAGCTGT TGAAGGTGGA CGGGGCGATC GCCGGCGCGT TCGCGTACTG GCGCGAGACC 
GGTCGGTTCG TCGTCTTCGA GGCACCGTCC GTGGTGCTCG CGACCGGCGG GATCGGCAAG 
TCGTTCAAGG TCACGTCGAA CTCGTGGGAG TACACCGGCG ACGGCCACGC CCTGGCGCTC 
CGCGCCGGGG CCGCCCTGAT CAACATGGAG TTCGTCCAGT TCCACCCCAC GGGCATGGTC 
TGGCCGCCGT CCGTGAAGGG GCTGCTGGTC ACCGAGTCGG TGCGCGGCGA CGGCGGCATC 
CTGAAGAACT CCGAAGGCCA GCGCTTCATG TTCGACTACA TCCCGGAGTA CTTCCGGGAC 
GAGACGGCGG ACACGGTCGA GGAGGCCGAC CGCTGGTACG ACGACAAGGC GAACAGCCGC 
CGCCCGCCCG AGCTGCTGCC GCGCGACGAG GTGGCCCGCG CGATCAACTC CGAGATCAAG 
GCCGGCCGGG GCACCCCGCA CGGCGGCATC TACCTCGACA TCGCCTCCCG CCGGTCCCCC 
GAGTTCATCC GCAAGCGGCT CCCGTCGATG TACCACCAGT TCAAGGAGCT GGCCGACGTC 
GACATCACCC AGGAGCCGAT GGAGATCGGG CCGACCTGCC ACTACGTGAT GGGCGGCATC 
GAGGTGGACG CCGACACCGA GCTGTCGGCG GTGCCGGGCC TGTACGCCGT GGGCGAGTGC 
TCGGGCGGCA TGCACGGCTC CAACCGGCTC GGCGGCAACT CCCTCTCCGA CCTGCTGGTG 
TTCGGCCGTC GGGCCGGCGA GTCTGCGGCG TCGTACTCCA CCTCGCTCGG CGGGTCCCGC 
CCGGCGGTGC GGGACGAGGA CGTGAAGGCG GCCGAGCGTG ACGCGCTCGC GCCGTTCGAG 
GTCACCGCAT CGGAGGGTGG CGGGGAGAAC CCCTACACGG TCCAGCAGGA CCTGCAGCAG 
TCGATGAACG ACCTGGTCGG CATCATCCGC ACCCGCCCCG AGCTGGAGCA GTCGCTCCAG 
GAGATCGACC GGCTCAAGGA GCGGGCCCGG CGGATGACGG TCGAGGGGCA CCGGCAGTAC 
AACCCCGGGT GGCACCTCGC GCTCGACCTG CGCAACATGC TGCTGGTCAG CGAGTGCATC 
GCGAAGGCCG CGCTCGAGCG CGAGGAGTCG CGCGGCGGGC ACACCCGCGA CGACTTCCCG 
GGGCCCAGCC CCGAGTGGGG GTCGAAGAAC CTGGTGCTCC GGCTGGCCGC CGACCGCACC 
GGCGTCGACC TCGCCCACCA GCCGCTCCCG GCGATGCCGG ACGAGCTCAA GAAGTTCTTC 
GAGTGA 

 

Protein sequence

MTEPQTRHPM TGNEMSGAEA GGLERHRYDV VVVGAGGAGL RAAIAAHETG ARTAIVCKSL 
LGKAHTVMAE GGIAAAMGNR WPEDNWEVHF RDTMRGGKML NNWRMAQLHA QEAPERVMEL 
EDWGALFDRT DDGLISQRDF GGHKYARLAH VGDRTGLEMI RTLQQRAVAL GIDVFMECTV 
TELLKVDGAI AGAFAYWRET GRFVVFEAPS VVLATGGIGK SFKVTSNSWE YTGDGHALAL 
RAGAALINME FVQFHPTGMV WPPSVKGLLV TESVRGDGGI LKNSEGQRFM FDYIPEYFRD 
ETADTVEEAD RWYDDKANSR RPPELLPRDE VARAINSEIK AGRGTPHGGI YLDIASRRSP 
EFIRKRLPSM YHQFKELADV DITQEPMEIG PTCHYVMGGI EVDADTELSA VPGLYAVGEC 
SGGMHGSNRL GGNSLSDLLV FGRRAGESAA SYSTSLGGSR PAVRDEDVKA AERDALAPFE 
VTASEGGGEN PYTVQQDLQQ SMNDLVGIIR TRPELEQSLQ EIDRLKERAR RMTVEGHRQY 
NPGWHLALDL RNMLLVSECI AKAALEREES RGGHTRDDFP GPSPEWGSKN LVLRLAADRT 
GVDLAHQPLP AMPDELKKFF E