| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3397 |
|---|
| Symbol | |
|---|
| ID | 4598195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3599881 |
|---|
| End bp | 3601278 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 639778004 |
|---|
| Product | xylulokinase |
|---|
| Protein accession | YP_924585 |
|---|
| Protein GI | 119717620 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0992186 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCACTCG TCGCGGGGGT CGACACCTCC ACCCAGTCCT GCAAGGTCGT CGTCTGCGAC
GCGGAGAGCG GGGAGCTCGT CCGCAGCGGC GCGGCCCCCC ACCCCGACGG CACCGAGGTG
CACCCGGACG CCTGGTGGGT CGCCTTCGAG CGGGCGAGTG CGGCCGCCGG CGGGCTCGAC
GAGGTCGAGG CGATCGCCGT CGGCGGGCAG CAGCACGGCA TGGTCTGCCT CGACGAGCAG
GGCGCGGTGG TGCGCCCGGC ACTGCTCTGG AACGACACCC GCTCCGCGCA GGCGGCGCTG
GACCTGATCG AGGAGCTCGG CGGACCCGGC GCCTGGGTCG ACGCCGTCGG CCTGGTGCCG
GTCGCGTCGT TCACCGTCAC CAAGCTGCGC TGGCTGGCCC GCCACGAGCC GGACAACGCC
GCCCGCACGG CGGCCGTCTG CCTGCCGCAC GACTGGCTGA CCTGGAAGCT GGCCGGCGCG
CCCTCGCTGG ACGCGCTGGT GACGGACCGT GGCGATGCCA GCGGCACCGG CTACTGGTCG
CCGTCGACGG GGCAGTACCG CCGCGATCTC CTCGAGCTCG GCCTGGGCCG CGACGTGGTC
CTCCCGCGGG TGCTCGGCCC GGCCGAGGTC GCCGGCCGGA CGCCGGCCGG CCAGCTGCTC
GGCCCCGGCA CCGGCGACAA CGCGGCGAGC GCGCTCGGCC TGGGAGCCGT CGCGGGCGAC
GTCATCGTCT CGATCGGCAC CTCCGGGGTG GCCTGCGCGG TCGCGGAGCA GCCCGTCGGC
GACGTCTCCG GCGCCGTCGC CGGGTTCGCC GACGCCACCG GCCGGTTCCT GCCGCTGGTC
GCGACCATGA ACGCCGCGCG GGTGCTCGCG GCCGCCGAGC GGATCCTCCG CGTGGACCAC
AGCGAGTTCT CCGAGCTCGC GCTCTCCGCA CCGGCCGGTG CCGGCGGCAT GGTGCTGGTG
CCCTACCTCG AGGGCGAGCG CACCCCGAAC CGCCCCGACG CCACCGGGGC CCTGCACGGC
ATGCGGCTGG AGACCACCGA CCCGGCGCAT CTTGCCCGCG CCGCGGTCGA GGGCATGCTC
TGCGGCCTGG CCGACGCGGT GGACGCCGTC CGGGCGCTCG GCACCCCGGT CGAACGGATC
ATCCTGGTCG GCGGGGCCGC CCGCTCGCGC GCCGTGCGCG AGATCGCCTC GGCCGTGCTC
GGGCTCCCGG TGACCGTCCC GCAGCCGGGG GAGTACGTCG CCCGCGGTGC CGCCCGCCAA
GCCGCCTGGG TGCTCTCGGG GGCCGCCGAG CCACCCGCGT GGCCGCTCGC TGACGTGGTC
GCCACCGAGG TCGAGCCGAC CCCACAGGTG CGGGCCCGGT ATGCCGAGGT CCGCGACCTG
ACAGCGACCC GGCCGTGA
|
|---|
| Protein sequence | MPLVAGVDTS TQSCKVVVCD AESGELVRSG AAPHPDGTEV HPDAWWVAFE RASAAAGGLD
EVEAIAVGGQ QHGMVCLDEQ GAVVRPALLW NDTRSAQAAL DLIEELGGPG AWVDAVGLVP
VASFTVTKLR WLARHEPDNA ARTAAVCLPH DWLTWKLAGA PSLDALVTDR GDASGTGYWS
PSTGQYRRDL LELGLGRDVV LPRVLGPAEV AGRTPAGQLL GPGTGDNAAS ALGLGAVAGD
VIVSIGTSGV ACAVAEQPVG DVSGAVAGFA DATGRFLPLV ATMNAARVLA AAERILRVDH
SEFSELALSA PAGAGGMVLV PYLEGERTPN RPDATGALHG MRLETTDPAH LARAAVEGML
CGLADAVDAV RALGTPVERI ILVGGAARSR AVREIASAVL GLPVTVPQPG EYVARGAARQ
AAWVLSGAAE PPAWPLADVV ATEVEPTPQV RARYAEVRDL TATRP
|
|---|
| |