Gene Noca_3278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_3278 
Symbol 
ID4599140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp3484532 
End bp3485779 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content72% 
IMG OID639777884 
Productmajor facilitator transporter 
Protein accessionYP_924467 
Protein GI119717502 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.471566 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCAGCC TGGCCGAGAT CGTCGCACCC CGCCGGCTCG GCACCGGGTT CCGGTGGCTG 
CTCGCGTCGT CCTGGGTGAG CAACCTCGGC GACGGACTGG CCCTCGCCGC CGGGCCCCTG
CTGGTGGCGT CCCAGACCCA CGACCCGTTC CTCGTCGCGC TCGCGGCGCT GCTCCAGTGG
CTGCCGCCGC TGCTGTTCGG GCTGTACGCC GGGGCGCTCG CCGACCGCCT CGACCGCCGG
CTGATCGTGG TGACGGTCGA CCTGTTGCGC GCCGTCGTCC TGGTGCTCCT CACGCTCGCG
ATCGCGACCG ACCTGGTCAC GATCACGCTG GTGCTCGTCA CGATGTTCCT GCTCGGCACC
GCGGAGGTGT TCGCCGACAA CACCGCGTCG ACGCTGCTGC CGATGCTGGT GCACCGCGAC
GACCTCGGCG TCGCCAATGC CCGGCTGACC ACCGGCTTCA TCACCGTCAA CCAGCTCGCC
GGCCCGCCGA TCGGCGCGGC CCTGTTCGCC GCCGGGCACG CCGTGCCGTT CGTCGCGCAG
GCGGTGGTGG TGGCGCTCGG CGCGCTGCTC GCCGCGCAGA TCGCGCTGCC GCCGCACGGG
CGGTCCCGCG ACGAGCGGCC GCAGCTGCGC CAGGACGTGG TCGAGGCGTT CCGCTGGGTG
CTGCACAACG CCGCCGTACG CACCCTGGTG CTGACGATCT TCGTCTTCAA CATCACCTTC
GGCGCGGCCT GGTCGATCCT GGTCCTCTAC GCCACCCAGC GGCTCGGGAT GGGGGAAGTC
GGCTTCGGGC TGCTGACCAC GGTGTCAGCG ATCGGCGGCC TGATCGGAAC CCTCGCCTAC
GGCTGGATCA CCCGCCGGGT CAGCCTCGCC AACATCATGC GAGCGGGCCT GGTCTTCGAG
ACCTTCACCC ACCTGGCGCT CGCCCTCACG ACGCGGCCGG CGGTGGCGAT GGCGATCTTC
TTCGTCTTCG GCGCCCACGC CTTCATCTGG GGCACGACGT CGACCACCGT CCGGCAGCGC
GCCGTGCCCG GCGAGCTGCA GGGCCGGGTC GGCAGCGTCA ACCTGGTCGG CGTGTTCGGC
GGCCTGGTCA TCGGCTCCGG CATCGGTGGT GGTCTCGCCC AGCACTGGGG CGTGACCGCG
CCGTTCTGGT TCGCGTTCGC CGGCTCCGCG GTCTTCGTCG TGCTGATCTG GGGCCAGCTG
GTCCACATCG CGCACGCCGA CGAGCAGGGG CAGCCGGCGG GGGCCTGA
 
Protein sequence
MTSLAEIVAP RRLGTGFRWL LASSWVSNLG DGLALAAGPL LVASQTHDPF LVALAALLQW 
LPPLLFGLYA GALADRLDRR LIVVTVDLLR AVVLVLLTLA IATDLVTITL VLVTMFLLGT
AEVFADNTAS TLLPMLVHRD DLGVANARLT TGFITVNQLA GPPIGAALFA AGHAVPFVAQ
AVVVALGALL AAQIALPPHG RSRDERPQLR QDVVEAFRWV LHNAAVRTLV LTIFVFNITF
GAAWSILVLY ATQRLGMGEV GFGLLTTVSA IGGLIGTLAY GWITRRVSLA NIMRAGLVFE
TFTHLALALT TRPAVAMAIF FVFGAHAFIW GTTSTTVRQR AVPGELQGRV GSVNLVGVFG
GLVIGSGIGG GLAQHWGVTA PFWFAFAGSA VFVVLIWGQL VHIAHADEQG QPAGA