| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3116 |
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| Symbol | |
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| ID | 4595546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 3319035 |
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| End bp | 3320510 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639777722 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_924305 |
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| Protein GI | 119717340 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.761799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCCTCG CCGACCGCCT CGCCGCGGCG CGCGCCGACG CCGCCGCGGA GGCACCCTCC
GTGGACCCCG CAGCCGCGCT CCAGAGCTCG GCCGACCCGG CAGCCACCGA CCCGGGTTCG
GCACCGGCAG CTCCCGCCAC GGCGGCGCCC GAGCCCGCCG CGGAGGCCGC ACTGGGCCGG
CGCCAGGCGC TGGCCGGCCG GCGCGACCGG ATCGAGGAGG TCAAGGGCAG CGTGCACGCC
GAGCTCCTCC AACAGCTCGG CCCCCAGCTC TACGACGCGG AGATGGACCA GGACGAGCTC
GACCAACGGG TCCGGGCGGT GCTCGCCGAG GTGCTCGGCG CCGAGGACCG GCCGTTGAGC
CACAGCGACC GGGCCCGGGT CACCCAGGAG ATCAGCGACG ACATCCTCGG CTACGGGCCG
ATCGAGCCGT TCCTGCGCGA GCCCACGGTC TCCGAGGTGA TGGTCAACGG CGCGCACAGC
ATCTGGATCG AGCGGGCCGG GCGGATCGAG CCCACGGCGG CGCACTTCGT CGACGAGTCG
CACCTGCGCC GCGTGATCGA CAAGATCGTG TCGCGCATCG GGCGCCGCGT CGATGAGTCG
AGCCCGATGG TCGACGCGCG GCTGCCCGAC GGGAGCCGGG TGAACGCGGT GATCCCGCCG
CTGGCGATCG ACGGCTCGGC GCTCACCATC CGCAAGTTCG CCACCACGCC GCTGACCGCC
GAGGACCTGG TCACGTTCGG CACGCTGAGC GAGCCCGCGC GGGACTTCCT CGCCGCCTGC
GTCCGCGGTC GGCTGAACGT GATCGTCTCG GGCAGCACCG GCGCCGGGAA GACGACGACG
CTCAACGTGC TCTCGTCGTT CATCCCCTCC GACGAGCGGA TCGTGACCAT CGAGGACGCC
GCGGAGCTCC AGCTCGAGCA GGAGCACGTG GTCCGCCTGG AGTCGCGGCC GCCGAACATC
GAGGGCCGCG GCGGCGTGGA CACCCGCGAC CTGGTCCGCA ACGCGCTGCG GATGCGGCCG
GACCGGATCG TGGTCGGCGA GGTCCGCGAC GCCTCCGCAC TGGACATGCT GCAGGCGATG
AACACCGGCC ACGACGGCTC GATCTGCACG GTGCACTCGA ACGGCCCGCG CGACACGCTC
GCCCGGATCG AGACCATGGT GCTGATGGCC GGCATGGACC TGCCGGTGCG GGCGATCCGC
GAGCAGATGG CCTCGGCGGT GGACCTGATC GTGCACCAGA CCCGGTTCAA GGACGGGTCC
CGCCGGGTCA CCCACATCAC CGAGGTCGAG CGGATGGAGG GCGACGTCGT CACCCTCCAG
GACGTCTTCG TCTTCGACCA GTCCCCCGGC TTCGACGCCG AGGGCCGCTC GTTGGGTCAG
CTGGTGGCCA GCGGCCTGCG CCCCAAGCTG CTCGAGAAGC TCGCGCACGC GAACGTCACC
GTCGACCCCT CGCTGTTCGT GGCGGGCCTG CGATGA
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| Protein sequence | MSLADRLAAA RADAAAEAPS VDPAAALQSS ADPAATDPGS APAAPATAAP EPAAEAALGR
RQALAGRRDR IEEVKGSVHA ELLQQLGPQL YDAEMDQDEL DQRVRAVLAE VLGAEDRPLS
HSDRARVTQE ISDDILGYGP IEPFLREPTV SEVMVNGAHS IWIERAGRIE PTAAHFVDES
HLRRVIDKIV SRIGRRVDES SPMVDARLPD GSRVNAVIPP LAIDGSALTI RKFATTPLTA
EDLVTFGTLS EPARDFLAAC VRGRLNVIVS GSTGAGKTTT LNVLSSFIPS DERIVTIEDA
AELQLEQEHV VRLESRPPNI EGRGGVDTRD LVRNALRMRP DRIVVGEVRD ASALDMLQAM
NTGHDGSICT VHSNGPRDTL ARIETMVLMA GMDLPVRAIR EQMASAVDLI VHQTRFKDGS
RRVTHITEVE RMEGDVVTLQ DVFVFDQSPG FDAEGRSLGQ LVASGLRPKL LEKLAHANVT
VDPSLFVAGL R
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