| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3068 |
|---|
| Symbol | |
|---|
| ID | 4600185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 3266753 |
|---|
| End bp | 3268267 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 639777674 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_924257 |
|---|
| Protein GI | 119717292 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.072481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGAGCG ACTCCAACCG GCCCGCGCAG CCGCCCCGGA CGCCGCTCGC GACCGTGGCG
GCCTGGGCCG GTGCCGAGCT GCGCGGCAAC CCCGCGGGCC TGGAGGTCAG CGGCATCTCG
TTGTCCTCGC AACGGATCCG GCCCGGTGAC CTCTACGCGG CGCTTCCCGG CAGCCGCGCC
CACGGCATCG AGTTCGCCCA GGACGCGCTC GCGGCCGGCG CGGTCGCGGT CTTCACCGAC
GAGGCGGGAG CCGACCGGGG CCCCGCGGGG GCTCCGCACC TGGTCGTCGA CCGGCCCCGC
GCCGTGCTCG GCCGGCTCTC GGCGCGCATC TACGGCGAGC CCGCGGCGTC GATGCGGATG
GTCGGGGTCA CCGGCACCCA GGGCAAGACC ACCACGACCC GGCTGCTCGA GGCCGGCCTC
CAGCAGGCCG GGGTGCCGGC CGCCGTGGTC GGCACGGTCG GCACCCGGAT CGCCGGCGAG
GAGGTGCGGT CGTCGCTGAC CACGCCCGAG GCGCCCGACC TCCATGCCCT GTTCGCGGTG
ATGCGCGAGC GCGACGTGCG CGCCTGCGCG ATGGAGGTCT CCAGCCACGC ACTGGTGATG
GGCCGGGTGG ACGGGGTCGT GTTCGACGTC GCGGTGTTCT TGAACCTGGG CCGCGACCAC
CTCGACTTCC ACCGCGACCT CGAGGACTAC TACGCGGCCA AGGCCTCGCT GTTCACCCCC
GAGCGCGCCC GGTTCGCCCT CGTGAACGTC GACGACGCGC ACGGCCGCCG GCTGGCCGAG
GAGGCCACCG TGCCGGTCCG GACGTTCTCG ATGGGCCGGG GAGACGACGC ACAGCGGGCC
GACTGGCGGG CTGTCGACGT GCGGCTGCGG GCCACCGGCT CGGAGTTCGT CGTCGTCGCC
CCCGACGGCC GCCGGATCCC GGCCGGGTGC GCGCTGCCCG GCGACTTCAA CGTCGCCAAC
ACGCTCGCGG CCGTGGCGGC CGCGGCCGAG GCCGGCCTGG ACCCCGCGGT GGTCGCCGCG
GGGATCGCCG CGGCCGGGGG CGTGCCCGGG CGTCTCGAGC GCGTCGACGC CGGTCAGGAC
TTCCTGGTCG TCGTCGACTA CGCCCACAAG CCCGATGCGG TCGAGGCGGC CATCCGGACG
CTGCGCCCGC TCACCGAGGG GCGGGTGATC GTCGTCCTCG GCGCCGGCGG CGACCGCGAC
CCGGGAAAGC GCCCGATCAT GGCTGGGATC GCCGCTCGGC TGGCCGATCT GTTGGTGGTG
ACCGACGACA ACCCGCGCAC GGAGGACCCG GCCGCGATCC GGGCGGCCAT GCTCGCCGGG
GTCGTGACCG GTCAGGCGAT CGAGGTCGGC GGCCGACGGG CCGCGATCCG CGAGGCGCTG
CGCCGGGCCG GACCGGGAGA CATCGTGCTG ATCGCCGGCA AGGGACACGA GACGGGGCAG
GAGGTCGACG GAGTGGTCCA TCCCTTCGAC GACCGCGAGG TCGTGCGGGA GGAGATCGTC
GCGTGCTCGA GATGA
|
|---|
| Protein sequence | MVSDSNRPAQ PPRTPLATVA AWAGAELRGN PAGLEVSGIS LSSQRIRPGD LYAALPGSRA
HGIEFAQDAL AAGAVAVFTD EAGADRGPAG APHLVVDRPR AVLGRLSARI YGEPAASMRM
VGVTGTQGKT TTTRLLEAGL QQAGVPAAVV GTVGTRIAGE EVRSSLTTPE APDLHALFAV
MRERDVRACA MEVSSHALVM GRVDGVVFDV AVFLNLGRDH LDFHRDLEDY YAAKASLFTP
ERARFALVNV DDAHGRRLAE EATVPVRTFS MGRGDDAQRA DWRAVDVRLR ATGSEFVVVA
PDGRRIPAGC ALPGDFNVAN TLAAVAAAAE AGLDPAVVAA GIAAAGGVPG RLERVDAGQD
FLVVVDYAHK PDAVEAAIRT LRPLTEGRVI VVLGAGGDRD PGKRPIMAGI AARLADLLVV
TDDNPRTEDP AAIRAAMLAG VVTGQAIEVG GRRAAIREAL RRAGPGDIVL IAGKGHETGQ
EVDGVVHPFD DREVVREEIV ACSR
|
|---|
| |