| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_3013 |
|---|
| Symbol | |
|---|
| ID | 4596460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 3209209 |
|---|
| End bp | 3210711 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639777618 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_924202 |
|---|
| Protein GI | 119717237 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.265613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCACATC CGCCGTCGAG TCGCTACTGT CCGACCAGCT GTCCGACCAC CCGTCTGACC
GTGTTGCAAC GCGGCGTCAC CACGCGCCCC GGCCCCAGGA GGCACATGCA CATCCGAGCC
ACGCACCTCG CCGCAGCGGC GGGTGCGCTT CTGATAGCAC TCCTCGCCGT GTTCGGCCCG
GGCGCAGCCG CAGCGGTCGC CTCGGGGCCG ACGCTGAGCG CCGCCGCCGG GGGCGGGTGC
CAGTACCCGA AGAACGACGA CGACCAGATC CACATCAAGG GCTGCCTGCG CGACCAGCGC
GAGGACCCGC CGGCCCCGGT CCCGGGCGTC TCGGTCACGG TCGAGGGCCC CGATGGCGAG
GTGGTCGCCA CGGTCGAGAC CGACGAGAAC GGCATCTTCG ACGTGGCGCT CCCCGGTGAC
CCGATCACCA ACCTGCGCAA GGACTTCACG ATCAAGATCG ACCAGGCCAC GCTTCCTGAG
GGCTCGGATC TGCGCAACCC CGAGCAGGTG GAGCTCACGC TCAACTTCGA CACGACCTCC
GACCAGGCGG TGGCGTTCCC GATCGGCGAC GCCCTGCCCG AGGGCGCCAG CACCTTCGTC
CAGGGCGTCC AGCTGGCCGT CGGCGGCATC GTCTTCTCGG TCTCCCTGGC CATGGCCGCT
CTCGGCCTGT CGATGGTGTT CGGCACGACC GGCCTGACGA ACTTCGCCCA CGGCGAGCTG
GTCACGTTCG GCGCCCTGGT CGCCTGGGGC ATCGACCTCC TGCCCGGCCA GATCACGATG
CCGGGCCTCG GCTGGAACAT CACCGTCGTC GTCGGCGTGA TCGTCGCGTT CGTCGCCGGC
GGCGTCCTCG GCCTGCTCAA CGACAAGCTG CTGTGGAAGC CGCTCCGGAT CCGGGGCACC
GGCATCATCG CGATGATGAT CGTCAGCATC GGCTTGTCGA TCTTCATGCG CAGCGTGTTC
CAGTACGTCG CCGGCGGGCA GAACCACAAC TACTCGCAGT ACTCCGCCAG CAAGCCCTGG
GAGATCGGGC CGGTCCTGAT CACGGCCCGC GATGTCGTCG TGATCATCGT CGGCGTCGCC
GTCCTGGTCG TCGTGTCCCT GGCGATCCAG CTCACCCGGA TCGGCAAGGC CACCCGTGCC
GTCGCCGACA ACCCCGGGCT GGCCGCGTCG TCGGGCATCA ACGTCCAGCA GGTGATCGCG
GTGGTGTGGA CCGTCAGCGT CGCGATCGCC GCACTGTCCG GCGCGCTCCT CGGCATCACC
CAGGGCTTCG ACTTCCAGCT CGGCTTCAAG CTCCTGCTGC TGATGTTCTC CGCGGTCGTC
CTCGGCGGGC TCGGCACGAT CTGGGGCGCC ATGGTGGGCG CGTTCCTGAT CGGCATCCTC
GTCGAGGTCT CGACGCTGGT GGTGCCCTCC GAGCTCAAGT ACGTCGGCGG CCTCGCGGTC
CTGGTCCTCG TCCTGCTCGT CCGTCCCCAG GGTCTGCTCG GCCGGGCCCA GCGCATCGGC
TAG
|
|---|
| Protein sequence | MPHPPSSRYC PTSCPTTRLT VLQRGVTTRP GPRRHMHIRA THLAAAAGAL LIALLAVFGP
GAAAAVASGP TLSAAAGGGC QYPKNDDDQI HIKGCLRDQR EDPPAPVPGV SVTVEGPDGE
VVATVETDEN GIFDVALPGD PITNLRKDFT IKIDQATLPE GSDLRNPEQV ELTLNFDTTS
DQAVAFPIGD ALPEGASTFV QGVQLAVGGI VFSVSLAMAA LGLSMVFGTT GLTNFAHGEL
VTFGALVAWG IDLLPGQITM PGLGWNITVV VGVIVAFVAG GVLGLLNDKL LWKPLRIRGT
GIIAMMIVSI GLSIFMRSVF QYVAGGQNHN YSQYSASKPW EIGPVLITAR DVVVIIVGVA
VLVVVSLAIQ LTRIGKATRA VADNPGLAAS SGINVQQVIA VVWTVSVAIA ALSGALLGIT
QGFDFQLGFK LLLLMFSAVV LGGLGTIWGA MVGAFLIGIL VEVSTLVVPS ELKYVGGLAV
LVLVLLVRPQ GLLGRAQRIG
|
|---|
| |