| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2963 |
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| Symbol | |
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| ID | 4595747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 3148288 |
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| End bp | 3149775 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639777568 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_924152 |
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| Protein GI | 119717187 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.743322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTCGTGT CCTCGAACGC GCGCAAGATG CTTCCTGCCG AGGTGCTCAC GCACCCTGCC
GTCAAGGCCC TCATCGAGCG AGGTACGCCG ACCGGCAGCA TCACTCCGGA GGAGGTGCGC
CAGGCCAGTG AGGACGCGGC CGTCGAGCCC CGCCACCTCA AGGCGCTGCT CGGGCACCTG
AGCTCGCTGG GCATCGCGGT CGAGATCCCC GTGACCAGCC GCGCTGTCGC GGCCACCTCG
GCCCGCAAGA CCGCCACCGC CAAGACGGCG GCCGCCAAGA AGGCACCGGC GAAGGCGGCG
GCCGCCCCCG CGAAGTCCGC TCCCGCGAAG AAGGCGGCGC CGGCGAAGGC TGCGCCCCGC
AAGGCTGCCG CCGAGGGTGC TGCCGGCACC GAGTCGGCCG AGCAGACCGT GACGGTCGGC
CCGGACGGCA AGAAGGTGCT GCCCGACCTG CCCGACGAGC AGTTCGAGAA GGACGTGGCC
GCCGACCCGA GCATCGCCGA GGACGAGAAG CAGGCGTCGT TCGTCGTCTC CGCGGCCGAC
GACACCGACG AGCCCGAGCA GCAGGTCATG GTGGCCGGCG CCACCGCGGA CCCGGTCAAG
GACTACCTCA AGCAGATCGG CAAGGTCCCC CTGCTCAACG CCGAGATGGA GGTCGAGCTC
GCCAAGCGGA TCGAGGCCGG CCTGTTCTCC GAGGAGAAGC TCGGGAAGGG CGGCAAGCTC
TCGGCGAAGG TGTCCGAGGA GCTGGAGTGG ATCGCCGAGG ACGGCCGGCG CGCGAAGAAC
CACCTGCTCG AGGCGAACCT GCGGCTGGTC GTCTCCCTGG CGAAGCGCTA CACGGGGCGC
GGGATGCTGT TCCTGGACCT GATCCAGGAG GGCAACCTCG GCCTGATCCG CGCGGTCGAG
AAGTTCGACT ACACCAAGGG CTACAAGTTC TCGACCTACG CCACGTGGTG GATCCGCCAG
GCGATCACCC GCGCGATGGC CGACCAGGCC CGCACCATCC GGATCCCGGT GCACATGGTC
GAGGTCATCA ACAAGCTGGC CCGCGTGCAG CGCCAGATGC TCCAGGACCT GGGCCGCGAG
CCCACTCCGG AGGAGCTGGC CAAGGAGCTC GACATGACCC CCGAGAAGGT CATCGAGGTC
CAGAAGTACG GCCGCGAGCC GATCTCGTTG CACACCCCCC TCGGCGAGGA CGGTGACTCC
GAGTTCGGCG ACCTGATCGA GGACTCCGAG GCGATCGTCC CGGCCGACGC CGTGTCGTTC
ACGCTCCTCC AGGAGCAGCT GCACGCCGTC CTCGACACGC TCTCCGAGCG CGAGGCGGGC
GTGGTCAGCA TGCGCTTCGG CCTGACCGAC GGCCAGCCGA AGACCCTCGA CGAGATCGGC
AAGGTGTACG GCGTGACCCG GGAGCGGATC CGCCAGATCG AGTCGAAGAC CATGTCCAAG
CTGCGGCACC CGTCGCGCTC CCAGGTGCTG CGCGACTACC TGGACTGA
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| Protein sequence | MFVSSNARKM LPAEVLTHPA VKALIERGTP TGSITPEEVR QASEDAAVEP RHLKALLGHL
SSLGIAVEIP VTSRAVAATS ARKTATAKTA AAKKAPAKAA AAPAKSAPAK KAAPAKAAPR
KAAAEGAAGT ESAEQTVTVG PDGKKVLPDL PDEQFEKDVA ADPSIAEDEK QASFVVSAAD
DTDEPEQQVM VAGATADPVK DYLKQIGKVP LLNAEMEVEL AKRIEAGLFS EEKLGKGGKL
SAKVSEELEW IAEDGRRAKN HLLEANLRLV VSLAKRYTGR GMLFLDLIQE GNLGLIRAVE
KFDYTKGYKF STYATWWIRQ AITRAMADQA RTIRIPVHMV EVINKLARVQ RQMLQDLGRE
PTPEELAKEL DMTPEKVIEV QKYGREPISL HTPLGEDGDS EFGDLIEDSE AIVPADAVSF
TLLQEQLHAV LDTLSEREAG VVSMRFGLTD GQPKTLDEIG KVYGVTRERI RQIESKTMSK
LRHPSRSQVL RDYLD
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