Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_2963 |
Symbol | |
ID | 4595747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 3148288 |
End bp | 3149775 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 639777568 |
Product | RNA polymerase sigma factor |
Protein accession | YP_924152 |
Protein GI | 119717187 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.743322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTCGTGT CCTCGAACGC GCGCAAGATG CTTCCTGCCG AGGTGCTCAC GCACCCTGCC GTCAAGGCCC TCATCGAGCG AGGTACGCCG ACCGGCAGCA TCACTCCGGA GGAGGTGCGC CAGGCCAGTG AGGACGCGGC CGTCGAGCCC CGCCACCTCA AGGCGCTGCT CGGGCACCTG AGCTCGCTGG GCATCGCGGT CGAGATCCCC GTGACCAGCC GCGCTGTCGC GGCCACCTCG GCCCGCAAGA CCGCCACCGC CAAGACGGCG GCCGCCAAGA AGGCACCGGC GAAGGCGGCG GCCGCCCCCG CGAAGTCCGC TCCCGCGAAG AAGGCGGCGC CGGCGAAGGC TGCGCCCCGC AAGGCTGCCG CCGAGGGTGC TGCCGGCACC GAGTCGGCCG AGCAGACCGT GACGGTCGGC CCGGACGGCA AGAAGGTGCT GCCCGACCTG CCCGACGAGC AGTTCGAGAA GGACGTGGCC GCCGACCCGA GCATCGCCGA GGACGAGAAG CAGGCGTCGT TCGTCGTCTC CGCGGCCGAC GACACCGACG AGCCCGAGCA GCAGGTCATG GTGGCCGGCG CCACCGCGGA CCCGGTCAAG GACTACCTCA AGCAGATCGG CAAGGTCCCC CTGCTCAACG CCGAGATGGA GGTCGAGCTC GCCAAGCGGA TCGAGGCCGG CCTGTTCTCC GAGGAGAAGC TCGGGAAGGG CGGCAAGCTC TCGGCGAAGG TGTCCGAGGA GCTGGAGTGG ATCGCCGAGG ACGGCCGGCG CGCGAAGAAC CACCTGCTCG AGGCGAACCT GCGGCTGGTC GTCTCCCTGG CGAAGCGCTA CACGGGGCGC GGGATGCTGT TCCTGGACCT GATCCAGGAG GGCAACCTCG GCCTGATCCG CGCGGTCGAG AAGTTCGACT ACACCAAGGG CTACAAGTTC TCGACCTACG CCACGTGGTG GATCCGCCAG GCGATCACCC GCGCGATGGC CGACCAGGCC CGCACCATCC GGATCCCGGT GCACATGGTC GAGGTCATCA ACAAGCTGGC CCGCGTGCAG CGCCAGATGC TCCAGGACCT GGGCCGCGAG CCCACTCCGG AGGAGCTGGC CAAGGAGCTC GACATGACCC CCGAGAAGGT CATCGAGGTC CAGAAGTACG GCCGCGAGCC GATCTCGTTG CACACCCCCC TCGGCGAGGA CGGTGACTCC GAGTTCGGCG ACCTGATCGA GGACTCCGAG GCGATCGTCC CGGCCGACGC CGTGTCGTTC ACGCTCCTCC AGGAGCAGCT GCACGCCGTC CTCGACACGC TCTCCGAGCG CGAGGCGGGC GTGGTCAGCA TGCGCTTCGG CCTGACCGAC GGCCAGCCGA AGACCCTCGA CGAGATCGGC AAGGTGTACG GCGTGACCCG GGAGCGGATC CGCCAGATCG AGTCGAAGAC CATGTCCAAG CTGCGGCACC CGTCGCGCTC CCAGGTGCTG CGCGACTACC TGGACTGA
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Protein sequence | MFVSSNARKM LPAEVLTHPA VKALIERGTP TGSITPEEVR QASEDAAVEP RHLKALLGHL SSLGIAVEIP VTSRAVAATS ARKTATAKTA AAKKAPAKAA AAPAKSAPAK KAAPAKAAPR KAAAEGAAGT ESAEQTVTVG PDGKKVLPDL PDEQFEKDVA ADPSIAEDEK QASFVVSAAD DTDEPEQQVM VAGATADPVK DYLKQIGKVP LLNAEMEVEL AKRIEAGLFS EEKLGKGGKL SAKVSEELEW IAEDGRRAKN HLLEANLRLV VSLAKRYTGR GMLFLDLIQE GNLGLIRAVE KFDYTKGYKF STYATWWIRQ AITRAMADQA RTIRIPVHMV EVINKLARVQ RQMLQDLGRE PTPEELAKEL DMTPEKVIEV QKYGREPISL HTPLGEDGDS EFGDLIEDSE AIVPADAVSF TLLQEQLHAV LDTLSEREAG VVSMRFGLTD GQPKTLDEIG KVYGVTRERI RQIESKTMSK LRHPSRSQVL RDYLD
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