| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2859 |
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| Symbol | |
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| ID | 4598458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 3033169 |
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| End bp | 3035073 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639777464 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_924048 |
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| Protein GI | 119717083 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.73079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCTCC TCGACTCGAT CGCGTCCCCG GCCGACCTGC GCGGGCTGAG CGACGCCCAG
CTGGAGCAGC TCGCGAGCGA GATCCGCGAT CTCCTGATCC GCACTGTCGC GACCAACACC
GGTCACCTCG GCCCCAACCT CGGCGTGGTG GAGCTGACCC TCGCGATCCA CCGGGTCTTC
GACTCCCCGC GCGACCGGGT GGTGTTCGAC ACCGGCCACC AGGCGTACGT GCACAAGCTG
GTGTGCGGAC GGGCGGCGAG CTTCGGCACC CTGCGCCGCG AGGGCGGCGT GAGCGGCTAC
CCGAGCCAGG CGGAGTCCCC CCACGACATC GTCGAGAACT CCCACGCGTC CACGGCGCTC
AGCTACGCCG ACGGGCTCGC GAAGGCCTAC ACGATCCGCG GCGAGGACCG CCACGTCATC
GCGGTCATCG GCGACGGCGC GCTCACCGGG GGGATGGCCT GGGAGGCGCT CAACAACATC
GCGATCGCCA AGGCCAGCAA GCTGGTGATC GTCGTCAACG ACAACGGCCG CTCCTACACG
CCGACGATCG GCGGCCTCGC GACCGCGCTC ACCTCGCTGC GCACCAACCC GCGCTACGAG
AACGTCCTCG ACCTGGTCAA GCGCCGGCTC AATGCCGTCC CGGGTGTCGG GCCGGCGGCG
TACGACGCGC TGCACGCCAT GAAGAAGGGG CTCAAGGACG CGCTCGCCCC CCAGGGCCTC
TTCGAGGACC TCGGGCTCAA GTACGTCGGC CCCGTCGACG GCCACGACCG CGCCGCGATG
GAGCAGGTGC TCGCCCAGGC CAAGCGGTTC AACGGCCCGG TGATCGTGCA CGCGATCACC
CGCAAGGGCT ACGGCTACGA CCCGGCCGAG CGGCACGAGG CCGACCAGTT CCACGCGCCG
GGCCCGTTCG ACGTGCAGAC CGGCGCGGAG AAGCCCAAGG GCCGGATCTG GACCGACGTC
TTCTCCGAGG AGATCGTCCA CCTCGGGCAC CGCCGCAAGG ACCTGGTCGG CATCACCGCG
GCGATGATGC ACCCGGTCGG CCTGGACGCC TTCCAGAAGC ACTTCCCCGA GCGGACCTTC
GACGTGGGGA TCGCCGAGCA GCACGCCGCG ACCTCGGCGG CCGGCCTCGC CATGGGCGGC
ATGCACCCGG TCGTGGCGCT GTATGGCACC TTCCTCAACC GGGCCTTCGA CCAGGTGCTG
ATGGACGTCG CGCTGCACAA GTGCGGCGTC ACCTTCGTGC TCGACCGCTC GGGGGTCACC
GGCGACGACG GCGCGAGCCA CAACGGCATG TGGGACATGT CGATCCTCCA GGTCGTGCCG
GGCCTGCGGC TGGCCGCGCC GCGCGACCCC GCCCGACTCC GTGAGCTGCT CAACGAGGCC
GTCGAGGTCG ACGACGCCCC GACCGTCGTG CGCTTCCCGA AGGGCTCGCC GCCCGAGGAC
ATCGAGGCCG TCGACCGGGC CGGCGGGGCC GACATCCTGG TCCGCAACGG CACCAAGGAC
GTGCTGGTGG TCGCGGTCGG CGCGATGGGC ACGACCGCGG TCGACGTGGC GCAGCGGCTG
ACCGCGCAGG GCATCGGTGT GACCGTCGTC GACCCGCGCT GGGTCAAGCC CGTCGACCCG
GCGATCGTCG AGCTCGCGCG CGAGCACCGC CTCGTGGTCA GCATCGAGGA CAACGGCGAG
ACCGGCGGCT GCGGAGCGGT GCTGCTGCAG ACGCTCAACG CAGCCGGCGT GCACACACCG
TTCCGCCTGC ACGGGATCCC GCAGCAGTTC CTCGGCCACG CGAAGCGCGC CGCGATCCTC
GAGCGGATCG GCCTGACCCC GCAGGCGATC GCGCTCCGCA TCGTGGAGGA CATGACCTCG
CTGACCGAAG GTCGTTCTCC TCTCGATGTC GAGCAGGCGA CCTAG
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| Protein sequence | MGLLDSIASP ADLRGLSDAQ LEQLASEIRD LLIRTVATNT GHLGPNLGVV ELTLAIHRVF
DSPRDRVVFD TGHQAYVHKL VCGRAASFGT LRREGGVSGY PSQAESPHDI VENSHASTAL
SYADGLAKAY TIRGEDRHVI AVIGDGALTG GMAWEALNNI AIAKASKLVI VVNDNGRSYT
PTIGGLATAL TSLRTNPRYE NVLDLVKRRL NAVPGVGPAA YDALHAMKKG LKDALAPQGL
FEDLGLKYVG PVDGHDRAAM EQVLAQAKRF NGPVIVHAIT RKGYGYDPAE RHEADQFHAP
GPFDVQTGAE KPKGRIWTDV FSEEIVHLGH RRKDLVGITA AMMHPVGLDA FQKHFPERTF
DVGIAEQHAA TSAAGLAMGG MHPVVALYGT FLNRAFDQVL MDVALHKCGV TFVLDRSGVT
GDDGASHNGM WDMSILQVVP GLRLAAPRDP ARLRELLNEA VEVDDAPTVV RFPKGSPPED
IEAVDRAGGA DILVRNGTKD VLVVAVGAMG TTAVDVAQRL TAQGIGVTVV DPRWVKPVDP
AIVELAREHR LVVSIEDNGE TGGCGAVLLQ TLNAAGVHTP FRLHGIPQQF LGHAKRAAIL
ERIGLTPQAI ALRIVEDMTS LTEGRSPLDV EQAT
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