| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2602 |
|---|
| Symbol | |
|---|
| ID | 4597150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 2767771 |
|---|
| End bp | 2768370 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639777208 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_923793 |
|---|
| Protein GI | 119716828 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.280121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCC CCGACGACCA AGGACCGCCG CACGCCCCAC ACGGTCCGTT GCCGGAGGGC
GGCACCGCGC GGTCGATCAC CCGCTGGGGG ACGCCGGTCA TGCACCGGGC GCAGCAGCCG
GTCACGACGT ACGACGACGA GCTCCGCGCC CTGGCCGCCG ACATGGTCGC GACCATGTAC
GCCGCGGACG GAGTCGGGCT CGCCGCCTGC CAGATCGGCG TCGACCTCGC GATGTTCGTC
TTCGACTGTC CTGACGACTC CGGCGTCCAC ACGGTCGGCG TCGTGTGCAA CCCGCAGCTG
ACCCTCCCGG AGGGCCGGGA CCGCCAGCTC GACGAGTCCG AGGAGGGCTG CCTCTCTTTC
CCGGGCGCGC ATGTCGAGTG CGCCCGGCCC GACCAGGCCT CCGTCACCGG CACCGGACTG
GACGGCGAGC CGGTCAGCTT CTCCGGCGAC GGACTGCTGG CGCGCTGCCT CCAGCACGAG
ACCGACCACA CCCGGGGCAC GGTCTTCGGC GATCGGCTCT CCACCAAGCT GCGCAAACGG
CTGCAGAAGG CGCACGACCG TGCGGTCGAG GACTACCCGC TGGAGTGGCC CGCAGGCTGA
|
|---|
| Protein sequence | MSSPDDQGPP HAPHGPLPEG GTARSITRWG TPVMHRAQQP VTTYDDELRA LAADMVATMY
AADGVGLAAC QIGVDLAMFV FDCPDDSGVH TVGVVCNPQL TLPEGRDRQL DESEEGCLSF
PGAHVECARP DQASVTGTGL DGEPVSFSGD GLLARCLQHE TDHTRGTVFG DRLSTKLRKR
LQKAHDRAVE DYPLEWPAG
|
|---|
| |