| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2508 |
|---|
| Symbol | |
|---|
| ID | 4597839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2675402 |
|---|
| End bp | 2676154 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639777114 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_923699 |
|---|
| Protein GI | 119716734 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.168106 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGAC TGGAAGGTCG CGTCGCGATC GTCACCGGCG CGGCGAGCGG CATCGGCAAG
GTGACCGCCC AGCGGCTCGC CGAGGAGGGC GCGGCGGTGC TGGTCACCGA CATCCAGGTC
GAGGCCGGCG AGGCCACGGT CAAGGAGCTC GAGGAGGCCG GCGGGCGCGC CGCGTTCATG
CGGCACGACG TCACGAGTGA GGCCGACTGG GAGGCCGCGT TCGCCAAGGC GGCCGAGGAG
TTCGGAGGTG TCGACATCCT CGTCAACAAC GCGGGCATGG GTGACATCAA GCCGATCGAG
GAGACCACCC TGGCCGAGTG GGACCGCACG GTCGCCATCG ACCAGACCGG TGTCTTCCTG
GGCATGAAGA TCGGCGCGCC GTACCTCAAG CGCTCGGAGC ACGCCTCGGT CGTCAACATC
AGCTCGATCT TCGGCACCAG CGGTGGCTTC GGCGTCTCAC CGGCCTACCA CGCCGCCAAG
GGTGCGGTGC GCACGCTGAC GAAGAACGTC GCGCTGCACT GGGCGACCGA GGGTGTCCGG
GTCAACTCCA TCCACCCCGG CTTCATCGCC ACGCCGATCC TCGAGCAGTC CCGCGACACC
CCGATCTGGG ACGGCATGGT GCAGCTGACG CCGATGGCCC GCCTGGGCCG CCCCGAGGAC
ATCGCGGCCG GCGTGGCCTA CCTGGCCAGC GACGACGCCG CGTTCGTCAC CGGGCTCGAG
CTCTACATCG ACGGCGGCTA CATGGCCCGC TGA
|
|---|
| Protein sequence | MRRLEGRVAI VTGAASGIGK VTAQRLAEEG AAVLVTDIQV EAGEATVKEL EEAGGRAAFM
RHDVTSEADW EAAFAKAAEE FGGVDILVNN AGMGDIKPIE ETTLAEWDRT VAIDQTGVFL
GMKIGAPYLK RSEHASVVNI SSIFGTSGGF GVSPAYHAAK GAVRTLTKNV ALHWATEGVR
VNSIHPGFIA TPILEQSRDT PIWDGMVQLT PMARLGRPED IAAGVAYLAS DDAAFVTGLE
LYIDGGYMAR
|
|---|
| |