Gene Noca_2441 details

Gene Information

• Locus tag: Noca_2441
• Symbol: def
• ID: 4598277
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 2603597
• End bp: 2604142
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 639777044
• Product: peptide deformylase
• Protein accession: YP_923633
• Protein GI: 119716668
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0409247
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCATCC AGCCGATCCG TCTCTTCGGG GACCCCGTCC TGCGCAAGCC CGCCATCGAG 
GTCGTCGACT TCGACAAGGA GCTGCGCCGG CTCGTCGCGG ACCTCACCGA CACCATGATG 
GACGCCCCCG GCGCGGGGTT GGCCGCGCCG CAGATCGGCG TGGGACTCCG GGTCTTCACC 
TGGTACGTCG ACGGCGAGCC CGGGCACCTG GTCAACCCGC AGCTGGACCT GTCGGACGAG 
CTGCAGGACG GTCCCGAGGG CTGTCTCTCG ATCCCGGGCC TCAGCGTGGA CTGCCAGCGC 
GCGATGGCTG CTGTGGCCCG CGGCTTCAAC ATGTACGGCG ACCCGGTGAC CATCGAGGGC 
ACCGAGCTGC TGGCCCGCGC GCTCCAGCAC GAGACCGACC ACCTCGACGG GGTGCTGTTC 
ATCGACCGCC TGGACACCGA GGCCCGCAAG GCCGCGATGA AGGCGATCCG CGAGTCGGAG 
TGGTTCGGCC TCGACGCCCC CCAGGTGAAG GTCTCTCCGC ACGCCACGCA CGGGCTCGGC 
TTCTGA 

 

Protein sequence

MAIQPIRLFG DPVLRKPAIE VVDFDKELRR LVADLTDTMM DAPGAGLAAP QIGVGLRVFT 
WYVDGEPGHL VNPQLDLSDE LQDGPEGCLS IPGLSVDCQR AMAAVARGFN MYGDPVTIEG 
TELLARALQH ETDHLDGVLF IDRLDTEARK AAMKAIRESE WFGLDAPQVK VSPHATHGLG 
F