| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2375 |
|---|
| Symbol | |
|---|
| ID | 4599475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 2530430 |
|---|
| End bp | 2531593 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639776978 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_923567 |
|---|
| Protein GI | 119716602 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02631] xylose isomerase, Arthrobacter type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGT CGAGCTTCAG CCCCACGCGC GACGACCACT TCACCTTCGG CCTGTGGACC
GTGGGGTGGC AGGGCGTCGA CGTCTTCGGC ACCGCGATCC GCCCGGTCCT CGAGCCGGCC
GAGGCGATCC ACCGGCTCAG CGACCTCGGC GCGTACGGCG TGACGTTCCA CGACAACGAC
GTGTTCCCCT TCGACGCGGA CGCCACCACC AAGGAGCAGC ACCTCGCACC GTTCCGCAAG
GCGCTCGAGG AGACCGGCCT GGTGGTCCCC ATGGTCACCA CGAACCTGTT CTCCCACCCG
GTGTTCCGCG ACGGCGGCTT CACCAACAAC CACCGCGACG TACGCCGGTT CGCGATCCGC
AAGGCCGCCG ACCAGATCGA TCTGGCCGCC GAGCTCGGCG CCAAGATCTT CGTCGCCTGG
GGCGGCCGCG AGGGAGCCGA GTCGGGGGCG GCGAAGGACA TCAAGTCGGC GCTGTCGCGC
TACAAGGAGG CCTTCGACCT GCTCGGCGCC TACGTGCTGG AGCAGGGCTA CGACCTGCGC
TTCGCGATCG AGCCCAAGCC CAACGAGCCG CGCGGCGACA TCCTGCTGCC GACCGTCGGC
CACGCCCTGG CGTTCATCAA CGAGCTCGAG CACCCCGAGC TGGTCGGCCT CAACCCCGAG
GTCGGGCACG AGGAGATGGC GTCCCTGAAC TACGCGCACG GCCTGGCCCA GGCGCTGTGG
CACGGCAAGC TCTTCCACAT CGACCTCAAC GGCCAGCACG GCCCCCGCTA CGACCAGGAC
CTCCGCTTCG GCGCCGGCAA CGCACGCGGC GCGTTCTGGA CCGTCGACAT CGTCGAGAAC
GGCGGCTACG AGGGCCCGCG GCACTTCGAC TACAAGCCAC CGCGCACCGA GGACATGGAC
GGTGTCTGGG TCTCCGCCGA GGCGTGCATG CGCAACTACC TGATCCTGCG CGAGAAGGTA
CGTGCCTTCC GCGCCGACCC CGAGGTGCAG CAGGCCCTGA AGGACGCCCG GGTCGACCAG
CTCGCGGTCC CGACCGTGGC CGCCGGCGAG TCGCTCGCCG ACCTGCGCGC CGAGGCGTTC
GATCCCGACC AGGCCGCCCA GCGTGGCATG GGCTTCGAGA AGCTCGACCA GCTCGCCCTG
GAGCACCTGT ACGGCGTGCG CTGA
|
|---|
| Protein sequence | MTESSFSPTR DDHFTFGLWT VGWQGVDVFG TAIRPVLEPA EAIHRLSDLG AYGVTFHDND
VFPFDADATT KEQHLAPFRK ALEETGLVVP MVTTNLFSHP VFRDGGFTNN HRDVRRFAIR
KAADQIDLAA ELGAKIFVAW GGREGAESGA AKDIKSALSR YKEAFDLLGA YVLEQGYDLR
FAIEPKPNEP RGDILLPTVG HALAFINELE HPELVGLNPE VGHEEMASLN YAHGLAQALW
HGKLFHIDLN GQHGPRYDQD LRFGAGNARG AFWTVDIVEN GGYEGPRHFD YKPPRTEDMD
GVWVSAEACM RNYLILREKV RAFRADPEVQ QALKDARVDQ LAVPTVAAGE SLADLRAEAF
DPDQAAQRGM GFEKLDQLAL EHLYGVR
|
|---|
| |