| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_2117 |
|---|
| Symbol | |
|---|
| ID | 4599961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 2262345 |
|---|
| End bp | 2263613 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639776720 |
|---|
| Product | sigma-70 region 2 domain-containing protein |
|---|
| Protein accession | YP_923313 |
|---|
| Protein GI | 119716348 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGGA GCAGTGGAGG GAGCAGCGCA GCGACAGGGG AGGCGATCAC CGCCGCGTGG
CGTGCGGAGT CCGCGCGCCT GGTCGGTGCG CTGACCCGGA TGACGCGGGA CCTCGGCCTC
GCCGAGGACC TGGCCCAGGA CGCGCTGGTG AGCGCGTTGG AGCAGTGGCC GTCCCGCGGC
ATCCCCGCCA ACCCGGCGGC GTGGCTGATG ACCACGGCGA AGCGCCGCGC CGTCGACGGG
TTCCGGCGGG CCGAGACCTT GCGCCGCAAG ACCGAGGAGC TCGGTCACGG CCTGAGCGAG
GAGGACGCGA TGCCGGACCT CAGCGCGCAG GTGGACTTCA TCGAGGACGA CGTCCTCCGG
CTGATCTTCC TGTCCTGCCA CCCACGGCTG ACCCCGGAGT CGCGGGCCGC CCTGACGCTC
CGCCTGGTCG GCGGACTGTC GACCGCGGAG ATCGCCCGTG GCTTCCTGGC TGCCGAGTCG
GCGATCGGCC AGCGCATCTC GCGCGCCAAG AGGACGCTCA GCGAGGTGCG TGCCGAGTTC
GAGCTCCCGG TGGGTGCCGA ACGCACCGCC CGGCTCGAGG ACGTGATGGC CGTCGTCTAC
CTGATCTTCA ACGAGGGCTA CACCGCCACG GCGGGCGAGG ACTGGATGCG CCCCGAGCTG
ACCGGCGAGG CGATCAGGCT GGCGCGGATG CTGGCCGAGC TGATGCCGGA CGAGCCCGAG
GCGCACGGGT TGCAGGCGCT GCTGGAGCTG CAGGCCTCCC GGGGGCCGGC GCGGGTCGAC
GCCGAGGGCC GGCCGGTGCT CCTCGACGAC CAGGACCGCA GCAGCTGGGA CGCCCTGCTC
ATCCGTCGGG GGCTGGCCGC GCTGGAGCGC GCCGAGGTGC TCGCCCGCGG CGGAGCCCCG
GTCGGCCGGT ACTACCTGCA GGCCGCGATC GCGGCGCAGC ACGCCCGGGC GGCGAGCAGC
GAGCACACCG ACTGGCGGGC GATCGCGGCG CTGTACGACG TGCTCGCCGA GGCCGCGCCC
GGCCCGGTGG TGGAGGTCAA CCGCGCGGTC GCCCACGGGC GGGCCTTCGG TCCGGCCGCC
GGGCTCGCCG TACTCGATGG CCTGCCGGAG GGTGCGCTCG CCGGATCGCA CCTGCTGCCC
AGCGTGCGTG GCGACCTGCT CGCGCGGGCG GGACGCCACC CCGAGGCGGC TGCATCGTTC
CGCGAGGCAG CCTCGCTCAC CCGCAACGAG AGCGAGCGGG CGCTGCTACT GCGCCGGGCA
GAGGAGTGA
|
|---|
| Protein sequence | MAGSSGGSSA ATGEAITAAW RAESARLVGA LTRMTRDLGL AEDLAQDALV SALEQWPSRG
IPANPAAWLM TTAKRRAVDG FRRAETLRRK TEELGHGLSE EDAMPDLSAQ VDFIEDDVLR
LIFLSCHPRL TPESRAALTL RLVGGLSTAE IARGFLAAES AIGQRISRAK RTLSEVRAEF
ELPVGAERTA RLEDVMAVVY LIFNEGYTAT AGEDWMRPEL TGEAIRLARM LAELMPDEPE
AHGLQALLEL QASRGPARVD AEGRPVLLDD QDRSSWDALL IRRGLAALER AEVLARGGAP
VGRYYLQAAI AAQHARAASS EHTDWRAIAA LYDVLAEAAP GPVVEVNRAV AHGRAFGPAA
GLAVLDGLPE GALAGSHLLP SVRGDLLARA GRHPEAAASF REAASLTRNE SERALLLRRA
EE
|
|---|
| |