Gene Noca_1809 details

Gene Information

• Locus tag: Noca_1809
• ID: 4597646
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 1923920
• End bp: 1925932
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639776408
• Product: alpha amylase, catalytic region
• Protein accession: YP_923008
• Protein GI: 119716043
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.341723
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGGAC GCATCCCCGT CATGAACGTC ACGCCACTGG TCGACCTCGG CCGGCAACCA 
GCGAAGGCCA CGGTCGGAGA GCCCTTCCCG GTGACCGCGA CGATCTTCCG CGAGGGCCAC 
GACAAGCTGG GCGCCGAGGT GGTGCTCACC GGTCCCGACG GCCGCCGCCG GGCGCCGGTC 
CGGATGACCA AGCACGCGAC GGTCCCGGAC CACTACGAGG CCTGGGTGAC CCCCGACACG 
GGCGGCGCCT GGAGCTTCGA GGTGATGGCC TGGTCCGACC CGCTCGCGAC CTGGCAGCAC 
AACGCCGCGC TCAAGGTCCC GGCCGGCGTC GACGTCGACC TGATGTTCAC CGAGGCCCGG 
ATCCTGCTCG AGAAGGTGAT CGCCTCGCTC GACCCCCGCG ACCCGCCCGC GGCCGACGCC 
GCCCAGGTCC TCCAGGGTGC CCTGGACACG GCCACCGACA CCAAGCGGCC ACCGGCCGCC 
CGGCTGGCCG TGCTCGAGGC CCCCGACGTC ACCGGCGTGC TCGCCACCCA CCCGATCCGC 
GAGCTGGTCA CGGTCGAGGG CCCCTACCCG GCGTACGCCG ACCGGCCGAA GGCGCTCACC 
AGCAGCTGGT ACGAGTTCTT CCCGCGCTCG GAGGGCGCCA CCAAGGACCT GAAGACCGGC 
AAGGTCACCA GCGGCACATT CGCGACCGCC GCCAAGCGCC TGGACGCCGT GGCGGCGATG 
GGGTTCGACG TCATCTACCT GCCGCCGATC CACCCGATCG GCGAGGTCAA CCGCAAGGGC 
CCGAACAACA CCGTCGACCC CGGTCCCGAC GCAGCACCGA AGGACTGGGC GGGGTCGCCG 
TGGGCGATCG GCTCCAAGGA CGGCGGCCAC GACGCGATCC ACCCCGACCT CGGCACCTTC 
GACGACTTCG ACGTGTTCGT CGCGAAGGCC CGGTCCCTCG ACCTCGAGGT CGCGCTCGAC 
CTCGCACTCC AGGCGGCGCC CGACCACCCG TGGGTGACCA CCCACCCGGA GTGGTTCACG 
ACCCGCGCCG ACGGCACCAT CGCGTACGCC GAGAACCCGC CGAAGAAGTA CCAGGACATC 
TACCCGATCA ACTTCGACAA CGACCCGACC GGCATCTGCC AGGAGGTGCT GCGGATCGTC 
CGGCTGTGGA TGTCGCACGG CGTGCGCATC TTCCGGGTCG ACAACCCGCA CACCAAGCCG 
GTGGCGTTCT GGGAGTGGCT GCTCAAGGAG ATCCGGCGCA CCGACCCCGA CGTGATCTTC 
CTGGCCGAGG CGTTCACCCG GCCGGCGATG ATGCGCGGCC TCGGCGCGAT CGGCTTCCAC 
CAGTCCTACA CGTACTTCAC CTGGCGCAAC GCGAAGTGGG AGCTCGAGGA GTACCTCCGC 
GAGCTGTCCC GCGAGACCGA CCACCTGATG CGGCCGAACT TCTTCGTGAA CACGCCGGAC 
ATCCTGCACG CCTACCTGCA GTACGGCGGG CCCGCGGCGT TCAAGATCCG CGCCGCGATT 
GCCGCGACCG GGTCGCCCAG CTGGGGCGTC TACGCCGGCT ACGAGCTGTA CGAGCACGTC 
GCGGTCCGCC CCGGCAGCGA GGAGTACCTC GACTCGGAGA AGTACCAGAT CCGGATCCGC 
GACTGGGACG CCGCCGAGCG CGAGCACCGC ACGCTCGCGC CGTACCTGAC GCGCCTCAAC 
GAGATCCGCC GCCGGCACCC GGCGCTCCAG CTGCTGCGCA ACGTGTCGAT CCACTGGAGC 
GACGACGAGA ACATCCTGGT GTTCAGCAAG CGGCGGGCGC TCCCCGACGG CCCCGACGAT 
GTCGTGATCG TGGTCGTCAA CGTCGACCCG CACGCAGCTC GCGAGACCAC GGTCCACCTC 
GACCTGGGCG CACTCGGGCT GTCGCCGACC GACTCGTTCC TGGTGCACGA CGAGATCACC 
GGCGCCGACT GGAGCTGGGG CGAGCACAAC TACGTGCGGC TCGACCCGTA CCACGAGCCG 
GCGCACATCT TGAGCGTGAG GAGGCCCCGG TGA 

 

Protein sequence

MVGRIPVMNV TPLVDLGRQP AKATVGEPFP VTATIFREGH DKLGAEVVLT GPDGRRRAPV 
RMTKHATVPD HYEAWVTPDT GGAWSFEVMA WSDPLATWQH NAALKVPAGV DVDLMFTEAR 
ILLEKVIASL DPRDPPAADA AQVLQGALDT ATDTKRPPAA RLAVLEAPDV TGVLATHPIR 
ELVTVEGPYP AYADRPKALT SSWYEFFPRS EGATKDLKTG KVTSGTFATA AKRLDAVAAM 
GFDVIYLPPI HPIGEVNRKG PNNTVDPGPD AAPKDWAGSP WAIGSKDGGH DAIHPDLGTF 
DDFDVFVAKA RSLDLEVALD LALQAAPDHP WVTTHPEWFT TRADGTIAYA ENPPKKYQDI 
YPINFDNDPT GICQEVLRIV RLWMSHGVRI FRVDNPHTKP VAFWEWLLKE IRRTDPDVIF 
LAEAFTRPAM MRGLGAIGFH QSYTYFTWRN AKWELEEYLR ELSRETDHLM RPNFFVNTPD 
ILHAYLQYGG PAAFKIRAAI AATGSPSWGV YAGYELYEHV AVRPGSEEYL DSEKYQIRIR 
DWDAAEREHR TLAPYLTRLN EIRRRHPALQ LLRNVSIHWS DDENILVFSK RRALPDGPDD 
VVIVVVNVDP HAARETTVHL DLGALGLSPT DSFLVHDEIT GADWSWGEHN YVRLDPYHEP 
AHILSVRRPR