Gene Noca_1719 details

Gene Information

• Locus tag: Noca_1719
• ID: 4598481
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: -
• Start bp: 1824493
• End bp: 1826388
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 639776318
• Product: ABC transporter related
• Protein accession: YP_922919
• Protein GI: 119715954
• COG category: [V] Defense mechanisms
• COG ID: [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.737168
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGTCCC TACGCCGGTG TCGCTTGGCA GGGATGCATA GATTGTCGAC ACGATCACCA 
CTACTCAAGG CGCTGGCAGC CGTGCGCCTC GTGGCCCGGA GCGGGCCACG CCAGTTCGCT 
GGCGTACTAC TGGCCGGTTG CGTGGCGGGG GCAATGCCAT TGCCGGCGGC ATGGGCAACC 
CAGCATCTCG TCGACGGGCT CAGTGCGGGC ACATTTGGCG CGGGCATGGC CCTAGCTCTT 
GCCACCATGG TCGCCGGGTT CGCGGCAGCA GCAACTCAGG TCAGCTATCT GTCCGCAATC 
GTAGGCGCGT CCCTTGAGGC AAGGTCGCGG ATCCGTTCTG AGCGTCTCCT TCTCGATGCC 
ACCATGCGGC ATGTGGGTAC CGAGTTTCTC GATGACCCAG ACGAGCACGA CAGCCTGACG 
CTTGCTCGCG AGGGCATCCG AATGATTCCC ACGTTGATCC CCAGTGCGAT CGTTGAGGTC 
GTCTCCACTC TCGTGACCTT CGTCGGCTAC GGAGTTCTGC TGTGGAGTTC ATGGCCACTC 
ATGGTCCTGG CCCTCGTCGC CGTGTCTGCA CCGACGGCGT ACATCCAGGT CCGAATCAAC 
CACGCGTCCG GCCGGATCGT TGAACGCAAT GCTCCCGCGC AGCGGTGGGA GCGGTATTTC 
GGTTCCCTCT TCGTGACTCC TGATGCCGCC CGAGATATGC GACTCCATGG AAGCAGCGGC 
TACCTTCGAA CGAGGTTCGA CGCGGCCCTG AGCCAGGCGC AATGGTCCGA GGTCGCTGCA 
GTCAAGAAGG CCACGGGCGC CCGGATGGCT CTGGTCGGCG CGCACGGGCT TGTCGTCGTG 
GCAGGCACCG CTTGGGCCGC GGTTGGGGCG GCGCATGGGC GCGTCACGGT AGGTGACTTC 
GTACTGTTCA CAACGGCTGT GATGGCAATT CAAACCCGCG CTGCCTCACT GCTGAACCTC 
CAGGGCAGGC TCAGTGTCTC GCTCCGACTA TTTGGGCACT ATCAGCGTTT TGTGCGCGCG 
AACTCGACTT CGACGGCGAG CGAGCTTTCT CATGTCCCCC TGCCCACGCC GTGTCTCAGT 
GACGCCATCC ACTTTGAGGA TGTCTGGTTC CGCTACAGCG AGGACCAAGA GTGGATTCTG 
CGCGGCCTGA ATCTCACGAT CCCCGCTGGC AAGACAACTG CGCTCGTCGG CCCGAACGGT 
GCAGGCAAGT CCACAATTGT CAGGCTCCTT CTACGACTGA ATACCCCATC CCGCGGACGA 
GTCCTGTGGG ACGGCGTCGA CATCGCGCGG TTCGATCCCG TTGATTACCG GCGACATGTG 
ACGGGAGTTC TACAGGAACG GCCCCGCTAC GAGATGTCGC TACGAGACAA TGTCTCACTG 
GGCAGGGACT CGCGGCTCGG GTCAGGAGGC CCGGACGAAG CCACATACAC CGCGCTGGCC 
GCAGCTAGGC TGACCGGGAT GATCGAATCT CTTCCGCACG GAGCGGACAC GATGCTCAGC 
ACACAGCGGC GGGACGCGTC TGGCGACGCA GGAATCACTC TGTCGGGCGG GCAGTGGGAC 
AGAGTTGCGG TCGCGCGCGC GAGATATGCC CAGTTATTGG GCGAGCCCAT TGACCTGGTG 
GTTCTCGACG AGCCGAACGC CGGGCTTGAT CCGATCAGCG AAGCGCAACT CATGGGCGAC 
ATCCTCGCTT TCGGAGAGGG CGCCACACGG CTGATCATCT CCCATCGGCT CGGCCTGGTA 
GCCGAGTCCG ATCATGTGGT TGTGATGAGC GACGGCGAGA TCTGCGAGCG AGGAAGTCGC 
TCAGAACTCC TCGCGCGGGG CGGGAACTTC CAGAGAATGT TCTCTGTACA AGCCGCGACC 
TACGTGATGC GAGATTCCGG CGATGTCGTC GGCTAG 

 

Protein sequence

MSSLRRCRLA GMHRLSTRSP LLKALAAVRL VARSGPRQFA GVLLAGCVAG AMPLPAAWAT 
QHLVDGLSAG TFGAGMALAL ATMVAGFAAA ATQVSYLSAI VGASLEARSR IRSERLLLDA 
TMRHVGTEFL DDPDEHDSLT LAREGIRMIP TLIPSAIVEV VSTLVTFVGY GVLLWSSWPL 
MVLALVAVSA PTAYIQVRIN HASGRIVERN APAQRWERYF GSLFVTPDAA RDMRLHGSSG 
YLRTRFDAAL SQAQWSEVAA VKKATGARMA LVGAHGLVVV AGTAWAAVGA AHGRVTVGDF 
VLFTTAVMAI QTRAASLLNL QGRLSVSLRL FGHYQRFVRA NSTSTASELS HVPLPTPCLS 
DAIHFEDVWF RYSEDQEWIL RGLNLTIPAG KTTALVGPNG AGKSTIVRLL LRLNTPSRGR 
VLWDGVDIAR FDPVDYRRHV TGVLQERPRY EMSLRDNVSL GRDSRLGSGG PDEATYTALA 
AARLTGMIES LPHGADTMLS TQRRDASGDA GITLSGGQWD RVAVARARYA QLLGEPIDLV 
VLDEPNAGLD PISEAQLMGD ILAFGEGATR LIISHRLGLV AESDHVVVMS DGEICERGSR 
SELLARGGNF QRMFSVQAAT YVMRDSGDVV G