| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1548 |
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| Symbol | |
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| ID | 4595488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1638813 |
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| End bp | 1641968 |
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| Gene Length | 3156 bp |
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| Protein Length | 1051 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639776147 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_922749 |
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| Protein GI | 119715784 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.637066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGTGA TTCGCCGTGC CGGGATCGTC CTTCGCGGCC TGCTCGCCGC GGTCGTCCTC
CTGGTCCTGG TCGTGGGAGT TCCGGCCGCG CTGGCAGTCA CCGTCGGCAA CCCAGTTCCT
GAAGGCTGGG CCTGGGGCCC ACCGCTCACG AATTCGGCTC TGCTCGGCAT CCTGGCCTGC
GTTGCCTGGG TGCTCTGGGT ACAGCTCTTG GTCTGCGTCA TCGTCGAGAC AGTCGCCGAG
ATCAGGCTCG CAGCAGGGCA CTCGGCGGAA TGGCTCGCGC GGGTTCCAGG CACCTTCGGC
GTTCAGCAGT CGCTGGCCCG CGCTCTCGTC CAGGCGGTAG TCGCGATCGG TGCGACGACC
ACCGCCGCCT CCGTCATTGC GACGCCCTGG ATCTTGCACG CCGATGCCTC GACCTCCAGC
CCGGCGCCGG CATCAGATCC CGCCGTGGCC GATCCCCCCG CTGTGGCGCC GACGCCGCAA
CTGCCGGCCA AGCACAGATC GCAGCAGACG ACCGAAGTCG TGGTCGCCCG CGGAGACACC
CTGTGGTCGA TCGCGGAACA TCACCTTGGT GCGGGCGAGC GCTGGCGAGA GATCGCCGAT
CTGAACAGGG ACCGCGAGAT GGTCGACGGG TCGAGGTTCG ACGACACTCG GACCATCCTG
CCCGGCTGGA CGTTGCTGGT CCCATCGGCG GACCCGTCGC ACCATCCGGC CGTCACGGTT
GCGCCGGGCG ACACCTTGTG GGAGATCGCG ACCGAGGAGT ACGGCGACGG CTCCAAGTGG
CCGCGGATCT ACCGGGCCAA CGACGACGAG ATCGAGGACC CGGATCTGAT CTACCCCGGA
CAGCGGCTCG ACGTATCAGG ATCGCGGACC GTCGAGCCGT CGAAGCCCCC GACGCAGCAC
GAGACTGATC CGCCTGCCGC CGACACCACA ACACGTCCAC AGGAGCCGGG GCCTTCGGAT
CACGCAGTGC CCTCGACCGA ACCGACCCCC GAGTCCACGC CGACGGAACC GGCCAATGCG
GCCGCCGAAC CCGGGCGGGA ACACGACGAC GCCCCCGACG ACTCGGAATT CCACGTCGAC
GGCGCCACGG TTGCTCGGGC ACTGCTGAGC GGGGGCGGCT TCCTCGCCGC CGGAATGCTC
GCGATCTACG TCGCCCGGCG GCGGACTCAG TCACGCAACC GCAAGTCCGG CAAGGCGGCG
CCGCCCGTGG CAGCGCACCT GCGGGCCGAG GACAAGGCGC TACGGGCCAT CGGCTCGTCG
GCGAGCGAGC GCGCGGCGTA CTTCGATGCG CTGCTGCGCG AGTTCCCCGC GCTCTGTGAG
CAGGCGAAAC TCGATCTGCC CGAGGCGGTC GCCGCCAGCC TCGGCAGCCA CGCGCTCGAA
CTGCACCTGC GGATACCGTC GCCAACGGCG CCGCCTCCGT GGAAGGTGTC TCAGGGCGGG
ACCGTGTGGA GTGTGTCGAC AGGGCGCCGA CCCACGTTGA CGGATCGCAC GCCGGCGTAC
CCAGCGATGG TCACGGTCGG GGTGGACGAC GAGGGCTGCA CGCTGTTCAT CGACATCGAG
GGCGCGGGCG TCGTACAGAT CGTCGGGGAC GCCGCGGCCG CGGTCGAGCT GGCTCGGTTC
ATGGCTGCCG AACTGGCTCT GAACCCCTGG TCGGACTGCG AGTCGATCGA AGTGAGCGGA
GGGGTCGAGG ACGTCCTGCC GCTCAACTAC GGGCGCCTGT ACGCCTCACC GAAGGCCGAA
GTCGAGCAGC TCGCGAAGTT CGCTCATCGA ATGGCCGAGG GAGTCGAGTC GGCCGGGACG
AGCGTCCTCG GGTCGCGGGT GACCGATCGG GACGCCTGCG TCCCGTCGCT CAGCATCTCC
GCGTTGGCGA ACGAGGATCT GTCAACGGGG CGGGAGCACA CAGCCGCCCT GCTCGACGAG
ATGGAGCGAG CGCCGGGTCG GACGTCGGCC GGGTTGGTCG TCGCTGCGGC CGACGTCGTG
GATCCGCGTG CCACCACGCT CGAGTTCAGA TCAGACGGCG ATCTCGTCAC GCCGTGGGGT
GTCGTCCGAC CGAACCGGCT GAGGACGGAG GAGGCCGCCG TTCTGGCGCA GCTGTTCGAG
GACGCGGAAA CCGAAGGTGA CGTCGACGTA CCGGCCGCCG TTGATGCACA CGGTGAGACG
ACCAACACGG ACCAAGCCGG GGCGATTGCA CAGGAGCTCA CCGAGGCACG TTGCGGCACC
GGCGATCCCG AGTCGACGCT TCCCCGCCCG GATCGGGCGT ACGTCGAATC CGCGGCCACC
ACATTCGAGG ACCTCGCCGT ACTCGCACCA GCTGTGCCCA AGAGTGAGGA AGCAGCCGCC
CTCGCATCCG ACCCCACGCT CGACCAGGAC CTTGCCGACT GGGCCGACCC GGGGTGCCCT
CGGCCGAAGC TCCGCGTCCT CGGGCCGGTC GAGCTTCGCG CGGTCGGGGA GAAGACCGCG
GAGGTCGAGG GGCGACCGGC GTACTACTCC GAACTTGCCG CGTATCTGGC CTGCCATCCC
GAAGGCGTAA CGCCGAACCG GGTCGCGGCG GACTTCGGCA TCCAGAACAA CACGCTCCAC
TCTCGGCTCA CCGGGCTACG GAAGTGGATG GGGAACAAGC CAGGCACCGA GGAGTGGTAC
CTGCCGGTCG CGCATCGGGT TCGCGGGCAG CAGGTCTACC AACTCTCCGA TGTGCTCGTC
GACGGAGACC TCTTCCGGCG ACTGCGCGGT CGCGGCGAGG CTCGCGGCCC GAGCGGCATC
GATGACTTCA GGACGGCGCT GGAGCTGGTG GCTGGCCAGC CCTACGAGCG GCAGCGCTCG
AACGGCTTCG GGTGGCTCGT GGACACCCCG GTCGACCAGT ACGCCGTCGT CGCGATCGTC
GACGTGGCTC ACGTGTATGC GACCCACTCG CTCGCGGAGG GTCGGCCCCG TGACGCCATG
TGGGCGGCCG AGCGGGCCAT CGCGGCCGCA CCGTCGGAGG ACAAGCCGCG GCTCGACCTG
GCCAAGGCGA TGCAGGCTTT GGGCGAGGTA GACGAGGCGG ATCGCTACCT CGGCCGAGAG
GTGTTCAACC GAACCGACGA CGACCGTGCG CCTCTCGATC CGTCCGATCG CACGAAGGAG
ATCTTCCACC GGATGGATCG GCCACACAGG GGCTGA
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| Protein sequence | MTVIRRAGIV LRGLLAAVVL LVLVVGVPAA LAVTVGNPVP EGWAWGPPLT NSALLGILAC
VAWVLWVQLL VCVIVETVAE IRLAAGHSAE WLARVPGTFG VQQSLARALV QAVVAIGATT
TAASVIATPW ILHADASTSS PAPASDPAVA DPPAVAPTPQ LPAKHRSQQT TEVVVARGDT
LWSIAEHHLG AGERWREIAD LNRDREMVDG SRFDDTRTIL PGWTLLVPSA DPSHHPAVTV
APGDTLWEIA TEEYGDGSKW PRIYRANDDE IEDPDLIYPG QRLDVSGSRT VEPSKPPTQH
ETDPPAADTT TRPQEPGPSD HAVPSTEPTP ESTPTEPANA AAEPGREHDD APDDSEFHVD
GATVARALLS GGGFLAAGML AIYVARRRTQ SRNRKSGKAA PPVAAHLRAE DKALRAIGSS
ASERAAYFDA LLREFPALCE QAKLDLPEAV AASLGSHALE LHLRIPSPTA PPPWKVSQGG
TVWSVSTGRR PTLTDRTPAY PAMVTVGVDD EGCTLFIDIE GAGVVQIVGD AAAAVELARF
MAAELALNPW SDCESIEVSG GVEDVLPLNY GRLYASPKAE VEQLAKFAHR MAEGVESAGT
SVLGSRVTDR DACVPSLSIS ALANEDLSTG REHTAALLDE MERAPGRTSA GLVVAAADVV
DPRATTLEFR SDGDLVTPWG VVRPNRLRTE EAAVLAQLFE DAETEGDVDV PAAVDAHGET
TNTDQAGAIA QELTEARCGT GDPESTLPRP DRAYVESAAT TFEDLAVLAP AVPKSEEAAA
LASDPTLDQD LADWADPGCP RPKLRVLGPV ELRAVGEKTA EVEGRPAYYS ELAAYLACHP
EGVTPNRVAA DFGIQNNTLH SRLTGLRKWM GNKPGTEEWY LPVAHRVRGQ QVYQLSDVLV
DGDLFRRLRG RGEARGPSGI DDFRTALELV AGQPYERQRS NGFGWLVDTP VDQYAVVAIV
DVAHVYATHS LAEGRPRDAM WAAERAIAAA PSEDKPRLDL AKAMQALGEV DEADRYLGRE
VFNRTDDDRA PLDPSDRTKE IFHRMDRPHR G
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