Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noca_1392 |
Symbol | |
ID | 4595865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nocardioides sp. JS614 |
Kingdom | Bacteria |
Replicon accession | NC_008699 |
Strand | - |
Start bp | 1467785 |
End bp | 1470718 |
Gene Length | 2934 bp |
Protein Length | 977 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 639775990 |
Product | PAS sensor protein |
Protein accession | YP_922593 |
Protein GI | 119715628 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.802774 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGCGC CGGACGACAG GACGACGCCC CGGCCGGCCG TGGCCGGGGT GGCGTGTGCC GTCGTCGGCG TCGTCGGCCT CCACCTGGTC ACCCCCTCGG GCCGCACGGG TGACCTGACC TACCTGGCCG GCGTCCTCGT CGCCGTCGCG ATCGCCTGGG TGGGCGTGCT CCGCCACCCG GCGGGCCGGG GCGTCCCGCT GCTGGTGGCG ACGGCCGTCA GCGTGTCCGT GACAGGGGAC GTGCTGGAGC GGTGCGTCGC GGGCTGGGCC GGGCTCGGCG TCGGCGAATG GTCGGCCGCG GTCGCCTACT TCATCGGCTA CCTGTTCCTC GGGGCCGCGT TGCTCCAGGT CCTCACTCCC CCGGGGAGCC GGAGACGCCT GGTGCGCGTC GACGCCCTCC TCGAGGCGGC GACCATCGTG ACCGTGGCGG TACTGCTCGT GTGGACGGCG TCCACCACCG CAGCGTTCGA GGCCACCGGA CTGAGTGTCG CCGAAGGCGC CCTCCAGGTC TCGACGCCGG TCGCGGACCT CACCCTGCTC GCCTTCGCGG CCCGCGCCGT CGTCGTACGT CGTGGCCGCT CGGCGACCGG CTGGCTGCTC ACGGGCGCCA CGGGCACGTG GCTGCTGACC AGCCTCGCGA TCGTGGCGGG CGGAGCCCCC GACCGCCTGG ACACCGGCTG GCTGCTCGGC ATGCTGCTCC TCGCGGCCGC CGCCCTGCCG CGCGATGCCG CCGCCGCGAG CATGGCTCGG GTCGGGCGGC CCGCCGTGCG GCGCCGGCAC ACCGCGCGGA TGCTGCTCGC CATCCTCCCG GCCGCCGTGC CCCCCGTGGC TCACCTGGTC ACCCACCACG ACCAGCGCGC CCTCTACGTC CCCTACCTCG GGATGGGCGT CCTGCTCCTG ATCACCCTGC TCCGCGTCGG CCGGCTCCTG GCGTCCGAGG ACGCCGCCCA CGCCGAGCTG GCGCGCAGCC ACGAGTACCT CCAGGCACTC GCGGACAACT CGGTCGACGC CATCCTCGTC GTCGACGAGC GGCTCGACAT CGTGTTCTCG TCCAGCGGCG TCCAGGAGTA CCTCGGCCCG TCGCCACGGC GCGGGCTGCC CGCCTGGGCC GAGGCCGCCG GGCTGCGGCT GCACGACGGG CTCGAGGACG CGCTGGCGCG CACCGTGGCG GCACCCGACG CCATCGTGCA GGAGGAGTTC CTGCTCGTGC CGGAGCACGA GAAGCCGCGC TGGATCCTCG CCCGGTTCGT CAATCTCCTC CATGATCCCG CCGTCCGCGG GATCGTGATC TCGCTGTCGG ACTCGACCGA GCGCAAGGAG ATGGAGCTGG AACTGGGCCG AGCGCGAGAC GCCGCGCTGG CCGGCTCGCG CGCGAAGTCG ACCTTCCTCG CCACCATGAG CCACGAGATC CGGACGCCGC TGAACGGGGT CCTCGGGCTG ACCGAGCTGA TGCTGACGAC CCGCCTGGAC GGCCAGCAGG GCCGGTACGC CGAGGGCATC CGGGTGGCCG GCGAGGCGCT GCTCCAGGTC ATCAACGACA TCCTCGACTT CTCCAAGATC GAGGCCGGCC GGCTGGAGCT GGAGGAGGTC GACCTCGACG TCGCCCGGTT GCTCGACGAG ACCGCCCGGA TGGTCGCGGG CCCGGCCCAG GAGAAGGGGC TCGCGCTCGT CGTACGCTGC TCGCCCGAGG TGCCGCCCGG GCTCCGTGGC GACGCGGTCC GCCTGCGCCA GGTACTGCTC AACCTCACCT CGAACGCGAT CAAGTTCACC CGGACCGGCG AGGTCGTCCT CTCGGCGCAG CTCGAGCGGG CACCGGTCGC GGACGTGGCG AGCGTGCGGT TCGAGGTCGC CGACACCGGC ATCGGCATCG ACCCCGCCCA GCGGGAGCAC CTGTTCGATG CGTTCACCCA GGCGGACTCC ACCACCACGC GGCGCTTCGG CGGCACCGGG CTGGGGCTGG CGATCAGCCG CCAGCTCGTC ACCGCCATGG GCGGTGCGAT CGGCGTCGAG CCACGGTCAG GTCCCGGGAG CCGGTTCTGG GTCGTCGTCC CGCTGCCCGT GCGCGCCGGC CAACCGCAGG CCCACCTGGC CCTGGCCGAC GCCTGGCGGG GGCAGTCCGC ACTGGTCGTC GACGACAGCG AGAGCAGCCG CACGGCGCTG GTCGAGCAGC TGACGCGTTG GGGAGTCGAG GTGGACCTGG CGTCTTCGGG CGACGAGGCA CTGGTCCGGC TGCACCAGGC GGCGGCCGCG GGTGCGCCGT ACCGCCTCGC GCTCCTGGAC CTGTCGATGC CCGGGATCAA CGGCCTCGAC CTCGCCGCCA TGATCGAGGA CGCCCCGGAG CTGGCCGGTA CGGCGACCAT CCTGCTCACG TCGGACACGG ACGTGCTGCC GACCGCGTCG CTCCCGGCGG GCCTGGCGGC CCGCCTCGTC AAGCCGGTGC GTCCGCACGC GCTGGTCGAG GCGATCGCCG ACCTCCCGAA CGGCCCAAGC GGCACGCCGG CACCGGAGCC CGCCCCCGAG CCACGAGGAG CCCGCCTCCT CGTCGTCGAG GACAGCGAGA TCAACCAACT CGTGGCGATC GGCATCCTCG AGCACCTCGG CTACCAGGTC GAGGTCGCCG CCGACGGGCT CGCCGCCCTG GAGGCGCTGC GCACGCAGTC CTTCGACGCG GTGCTCATGG ACTGCCTGAT GCCCGTGATG GACGGCTACC AGGCGACCGC CGAGATCCGC CGCCTGGAGC TGGGCGGCCG CGGCCTGCCG ATCATCGCGA TGACCGCCTC CGCGGTCGCG GGCGACCGCG AGCGCTGCCT GGCCGCCGGC ATGGACGACT ACATCACCAA GCCGGTGACC AGTGGGTCGC TCGAGACCGT CCTCGCGCAC TGGCTGCGCT CCCCCTCGAC GGCGGGCAGC GCCGAGGTGT CCGCCGAGGG CTGA
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Protein sequence | MDAPDDRTTP RPAVAGVACA VVGVVGLHLV TPSGRTGDLT YLAGVLVAVA IAWVGVLRHP AGRGVPLLVA TAVSVSVTGD VLERCVAGWA GLGVGEWSAA VAYFIGYLFL GAALLQVLTP PGSRRRLVRV DALLEAATIV TVAVLLVWTA STTAAFEATG LSVAEGALQV STPVADLTLL AFAARAVVVR RGRSATGWLL TGATGTWLLT SLAIVAGGAP DRLDTGWLLG MLLLAAAALP RDAAAASMAR VGRPAVRRRH TARMLLAILP AAVPPVAHLV THHDQRALYV PYLGMGVLLL ITLLRVGRLL ASEDAAHAEL ARSHEYLQAL ADNSVDAILV VDERLDIVFS SSGVQEYLGP SPRRGLPAWA EAAGLRLHDG LEDALARTVA APDAIVQEEF LLVPEHEKPR WILARFVNLL HDPAVRGIVI SLSDSTERKE MELELGRARD AALAGSRAKS TFLATMSHEI RTPLNGVLGL TELMLTTRLD GQQGRYAEGI RVAGEALLQV INDILDFSKI EAGRLELEEV DLDVARLLDE TARMVAGPAQ EKGLALVVRC SPEVPPGLRG DAVRLRQVLL NLTSNAIKFT RTGEVVLSAQ LERAPVADVA SVRFEVADTG IGIDPAQREH LFDAFTQADS TTTRRFGGTG LGLAISRQLV TAMGGAIGVE PRSGPGSRFW VVVPLPVRAG QPQAHLALAD AWRGQSALVV DDSESSRTAL VEQLTRWGVE VDLASSGDEA LVRLHQAAAA GAPYRLALLD LSMPGINGLD LAAMIEDAPE LAGTATILLT SDTDVLPTAS LPAGLAARLV KPVRPHALVE AIADLPNGPS GTPAPEPAPE PRGARLLVVE DSEINQLVAI GILEHLGYQV EVAADGLAAL EALRTQSFDA VLMDCLMPVM DGYQATAEIR RLELGGRGLP IIAMTASAVA GDRERCLAAG MDDYITKPVT SGSLETVLAH WLRSPSTAGS AEVSAEG
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