Gene Noca_1340 details

Gene Information

• Locus tag: Noca_1340
• ID: 4598580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nocardioides sp. JS614
• Kingdom: Bacteria
• Replicon accession: NC_008699
• Strand: +
• Start bp: 1412168
• End bp: 1414216
• Gene Length: 2049 bp
• Protein Length: 682 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 639775936
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_922541
• Protein GI: 119715576
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5002] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.725746
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGCGCTC GGGAGGAGTG GTTCACCGTG GCGAGGTCGT GGGTCGTGCG CGTCACCGGC 
CTGCTCGCGC TGATGGCCCT GGTGGGCGTC ACCGCCGTCC AGGGGGCGCC CGACGGTGGC 
CGGGCGATCG GGATCTGGCC GGTCGGCCTG GCGACGGGCT GCTTCATGGT GGCCCCGCGC 
CCGCGGACCC CGGTGCTGGT CGTCCTCGTG GCACTGCTCG CGACCGGCAG CATCTGGGTG 
GGCGGCCGCG GCCCGGACGT CGCGGTCGGC CTCGGTGTCG GGCTCGCTGT CGGCGCCTGG 
CTGATGTGGC GGGTCCTGGC GCAGGGTCGC CGCGAGCGCC CCATGCTGCA CACCAGCGCG 
GACCTGGCCC GCTTCCTCGG CGGGGCGTTC GCGAGCGCAC TCGTGGTCGC AGCGGCAGCG 
GCCGTGACCA GCTCGGTGAC GGGCTGGGGC GACCCGGGCC TCCTCGCCCT CGCCGTCGGG 
ACCTCGAACC TGAGCGCTCA GTCCGCCGTC GTCCCGTTCT TCTGCCGACT GCGCAACCAT 
GCACCGCTCG CCGGACCCAC GGAGCGGCTC GCCCAGTGGC TGCTGATCCT GACGATCACC 
CCGGCGGTCT TCGTTCCCCA GGACTTCCCG TCGGTCGTCT TCCTCGTGGT CCCGGTGCTG 
GTGTGGGGCG CAATGCGCAG CAGCCCCTAC GAGGCGCTCG CCCAGCTGAT CACGACGCTG 
GGCTTCGCGA TCCCGCTCAC CACCTGGGGC CACGGCCCGT TCGCCGACGC CGGGCCGCGC 
TTCCAGATGT CGGTGGACGG CCAGGGCATC CTGCTGGCGA CGTACGGCGT GGTCTGCGCG 
CTGGTCGTGA TCCCGTTGGT GCTGACGGTG AGCGAGCAGC TCGAGCACGC CCGGCAGGCG 
GCGGCCGAGC GCGACAAGGT CCAGAACATC GTCAACGGGA CCGCCGGCGT GGCGATCATC 
GGCACCGACG AGCACGGCCG GGTGACCCTC TTCAACCCCG GCGCGGAGCG GCTGCTCGGC 
TACCGGGCCG ACGAGGTCCT CGGCCGGCTG ATCCGAGAGT TCCACTCCGC GGACGCGATC 
TCCGAGAAGG CTGCGGAGCT CGGCGTGGCC GCCGACTTCG GCGTGGTTGC GAGGTCGCTG 
ATCGGCCAGG GCGCCACCGA TATGCGCTTC CTGCGCAAGG ACGGCGAGGA GCGCAGCCAC 
TCGATGTCGC TGAACCGGAT CGAGGACGAC CGTGGTCGGG TGATCGGCTA CGTCAGCACC 
TCGGAGGACA TCACCGAGCG GGTGGAGGCC GAGGGCCGGC TGGTGGAGGC GTTGGAGACC 
GAGCGCCAGG CGGTCGAGCG GCTGCGGGAG GTGGACCAGG TCAAGGACGC GTTCGTCTCG 
AGCGTCAGCC ACGAGCTGCG CACCCCGATC ACCAGCATCC TCGGCTACAC CGAGATGCTC 
GAGGACGGGG TGTACGGCGA CCTCGGGCGC GAGCAGCTCG ACGCGGTGCG TCGGGTCGCG 
GCCAACAGCA CCCGCCTGCT CTCGCTGATC AACGACCTGC TCACGCTCTC CCGGGTCCAG 
GAGGACGAGA TCGGCATCGT CGACCGCGTC TTCGACCTGC GCTCGGTGGT CTCGGCCGGG 
ACGGCCGTCG TCGCACCGAC GCTCGAGCGG AGGTCGCTCG AGCTGACCGC GGAGCTGCCC 
GACGAGCCGG TCCCGTTCCT CGGCGACCGA GACATGCTCG AACGGGTGGT GATCAACCTG 
GCCGGCAACG CCGCGAAGTT CACCCCCGAG GGCGGCCGCA TCGGGGTGCG GCTGCTGGTC 
GGGCCGGAGG AGTCGGTGAT CGAGGTCAGC GACACCGGCA TCGGCATCCC GCACCAGGAG 
CAGGAGCGGC TGTTCAGCCG GTTCTTCCGG TCCTCCCTCG CCCAGGAGCG AGCGATCCCG 
GGCAGTGGAC TAGGCCTCTC GATCGCGCAC GCGATCGTCG AGAAGCACGG TGGCACCATG 
AGTGTCGACT CCGAGCCGGG GGAGGGTACG ACGTTCCGGG TCCACCTCCC GGCCCTCACG 
GCGCCCTGA 

 

Protein sequence

MGAREEWFTV ARSWVVRVTG LLALMALVGV TAVQGAPDGG RAIGIWPVGL ATGCFMVAPR 
PRTPVLVVLV ALLATGSIWV GGRGPDVAVG LGVGLAVGAW LMWRVLAQGR RERPMLHTSA 
DLARFLGGAF ASALVVAAAA AVTSSVTGWG DPGLLALAVG TSNLSAQSAV VPFFCRLRNH 
APLAGPTERL AQWLLILTIT PAVFVPQDFP SVVFLVVPVL VWGAMRSSPY EALAQLITTL 
GFAIPLTTWG HGPFADAGPR FQMSVDGQGI LLATYGVVCA LVVIPLVLTV SEQLEHARQA 
AAERDKVQNI VNGTAGVAII GTDEHGRVTL FNPGAERLLG YRADEVLGRL IREFHSADAI 
SEKAAELGVA ADFGVVARSL IGQGATDMRF LRKDGEERSH SMSLNRIEDD RGRVIGYVST 
SEDITERVEA EGRLVEALET ERQAVERLRE VDQVKDAFVS SVSHELRTPI TSILGYTEML 
EDGVYGDLGR EQLDAVRRVA ANSTRLLSLI NDLLTLSRVQ EDEIGIVDRV FDLRSVVSAG 
TAVVAPTLER RSLELTAELP DEPVPFLGDR DMLERVVINL AGNAAKFTPE GGRIGVRLLV 
GPEESVIEVS DTGIGIPHQE QERLFSRFFR SSLAQERAIP GSGLGLSIAH AIVEKHGGTM 
SVDSEPGEGT TFRVHLPALT AP