| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1138 |
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| Symbol | |
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| ID | 4599391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | - |
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| Start bp | 1206404 |
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| End bp | 1208887 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 639775734 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_922341 |
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| Protein GI | 119715376 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0051075 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCACG GACTGCGCCC ACGGCGCCGG AGCCGGTTCG GCCCGCTGAC CGGCCCGTCG
TACGCCGAGC ACTTCGAGCG GTCACCCGTG CCGCAGGCGG TGTGCGACGA GAACGCCGTG
CTCGTCGCGG TCAACCCCGC CTTCGCCCGG ATGCTCGACG GGCCACCCGG AAGCCTCACC
GGCCGCCCGA TCCGGGACCT GGCCCACCGC TCCGACCAGG GTGCGGCCGA CCGGGCCCTG
GGGCGGCTGC TGCGCTCCGA GACCGACGCG ACCCAGGCCG AGCGGATCCT GCGCCGCTCC
GACGGCCGGC CGGTGCCGAC CCTGGCCAGC GCCACCGCGG TGCGCAACGG GTCCCCACGG
CCGAGCGGCG CACTCGTGGT CTACCAGGAC CTGAGCCTGC TGCAGAGCGT CGAGCGCCGG
CGCCGGCAGC AGGAGGACTT CTTCCTCGCG CTCGCGCAGC GGGCCAGCGA CCTGGCCGTG
GTGCTCGACC CCGACGCCAC CGTGCTGTTC GCCTCACCCG CGATGACCGG CGTCCTCGGC
CACGCGATCG AGGACGTGCT GGCGAACGAC GCGATGGACT ACGTCCACCC CGACGACGTC
GAGCGCGCCC GGGCGGTGCT GGCGGAGGTC GTCGGCGCGG GCGGCAGCGT GGGCACGACG
ACCCGGCTCC GCGACCACCG CGGCACCTGG CACTGGATGG AGCTCACCGC CACGAACCTG
CTCGACACCT CCGTCGGCGG CGTGGTCTGC AACCTGCGCG ACGTGACCGA CCGGGTCCGG
GCGGAGGCGG CGCTGCGCGC GTCCGAGCGC CGTTACCGCG CGATCGCCGA CAACGCCGAC
GAGGGCCTGT GGGTGACCGC ACCCGACGGC CGCTCGGCGT ACGTCAACCA GCGCCTGGTG
GAGATCCTCG GGCTGGAGGC CGAGGAGATC CTGGGCCGCC CGGTCCTGGA GGTGCTCGAC
CCGCACGAGC AGCCGATGAC CCGGGTGCTC GCCGCCGGGA CCGACGACGG GACCCAGCGG
CACGAGGTGA CCTATCGGCA CCCGGACGGC GGCCGGCGGT CCCTGGTCGT GTCGACCTCC
CCCCTCGACG ACGCCGGCGG CGCCGTCGAG GGATCGCTGG CGATGGTCGC GGACGTGACC
GACGCCCGGC GGCTCGAGCG GGAGCTGCGC GACGCCGCCC TCCACGACGG CCTCACCGGG
CTGCCCAATC GGGCGTTGCT GCGCGACCGT CTCGAGCACG CCCTCGCCCG CGAGACCCGC
TCCACGGCGG CGCTGCTCAT CGACCTGGAC CGGTTCCGGG TCGTCAACGA GTCCCGCGGG
CACGCCGCGG GCGACACCCT CCTCGCCGAC ACCGCACACC GCCTGGCGGC GGCGGTTCGG
CCCACCGACA CCGTCGCCCG GTTCGGCGGC GACCAGTTCC TCGTGATCTG CGAGGACGTC
GACGAGCAGG AGGCCCGGGC GATCGGCGAG GACGCCCTCG GCGCGTTGCG CCCGCCGTTC
CCGGCCGGCG GCGGCGACGT CACGCTCACC GCGTCGGCCG GCCTGGCGCT GACCCCCGCA
CCCTCCGCCG GCGCGCTGGT GCGTCGCGCC GAGACCGCGC TGCGGGCGGC GAAGGCCGCG
GGCGGGGCCC GGGTCCAGGC GTACGACGCC GAAGCGGCCG CCGTGTCCGA GCAGCGCTTC
GAGCTCGGCG TGGAGCTCGC CCGGTCGCTG GCCGCCGACG AGCTGGCCCT GCACTACCAA
CCCGTGATCG GCCTGGCCTC CGGCGAGGTG GTCGGCGTCG AGGCGCTGTG CCGCTGGCAG
CACCCGCTTC TCGGCCAGGT GCCCCCGTCG ACCTTCATCG AGATCGCCGA GGCCGAGGGC
CTGGCCGCCA CCCTGGACCG CTGGGTGGTC GAGCGGGCGC TGCGTGAGGC CGCGGAGCTC
CGCGCGTCGG GGGCGCTGCC GCCGACGGCG TACGTCGCCG TCAACGTCTC GGCGCGCTCG
CTGGCCGATC CCGGGCTCGC GGAGCACGTC CTGCGGGCGG CCCAGACGGC GGGGACGGCC
CCACAGGACG TCCTCCTCGA GGTCACCGAG AGCGCGACCA TGACCGACCC TGCGGCGGCG
GCGGACCTGC TCGGACGGCT GCGGCGACAC GGCTTCCGGG TGGCCGTCGA CGACTTCGGC
ACCGGGCACA GCTCGCTGGC CTACCTGCGG CGGCTGCCGG TCTCCGTGCT CAAGGTGGAC
CGCAGCTTCG TCGCGGAGGT CGCCACCGAC GAGCACGCGC GCGCGATCAC CGGCTCGATC
GTCGACCTGG CGCGCACGAT GGGCCTCTCG GTCGTCGCCG AGGGCGTCGA GACGCCCGCG
CACGCCGCCG TGCTGCGCCG CCTCGGCGCC GACGCGGGAC AGGGCTGGCT GTGGAGCCCC
GCCGTGTCCC CCGAGGAGGC GACTCGGACC GGCGCGCTGT GCCGGGCCTA CTCCGTGGGC
ACCGGCCCCT CGCCGTCGTC CTGA
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| Protein sequence | MWHGLRPRRR SRFGPLTGPS YAEHFERSPV PQAVCDENAV LVAVNPAFAR MLDGPPGSLT
GRPIRDLAHR SDQGAADRAL GRLLRSETDA TQAERILRRS DGRPVPTLAS ATAVRNGSPR
PSGALVVYQD LSLLQSVERR RRQQEDFFLA LAQRASDLAV VLDPDATVLF ASPAMTGVLG
HAIEDVLAND AMDYVHPDDV ERARAVLAEV VGAGGSVGTT TRLRDHRGTW HWMELTATNL
LDTSVGGVVC NLRDVTDRVR AEAALRASER RYRAIADNAD EGLWVTAPDG RSAYVNQRLV
EILGLEAEEI LGRPVLEVLD PHEQPMTRVL AAGTDDGTQR HEVTYRHPDG GRRSLVVSTS
PLDDAGGAVE GSLAMVADVT DARRLERELR DAALHDGLTG LPNRALLRDR LEHALARETR
STAALLIDLD RFRVVNESRG HAAGDTLLAD TAHRLAAAVR PTDTVARFGG DQFLVICEDV
DEQEARAIGE DALGALRPPF PAGGGDVTLT ASAGLALTPA PSAGALVRRA ETALRAAKAA
GGARVQAYDA EAAAVSEQRF ELGVELARSL AADELALHYQ PVIGLASGEV VGVEALCRWQ
HPLLGQVPPS TFIEIAEAEG LAATLDRWVV ERALREAAEL RASGALPPTA YVAVNVSARS
LADPGLAEHV LRAAQTAGTA PQDVLLEVTE SATMTDPAAA ADLLGRLRRH GFRVAVDDFG
TGHSSLAYLR RLPVSVLKVD RSFVAEVATD EHARAITGSI VDLARTMGLS VVAEGVETPA
HAAVLRRLGA DAGQGWLWSP AVSPEEATRT GALCRAYSVG TGPSPSS
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