| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1137 |
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| Symbol | |
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| ID | 4599390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 1204275 |
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| End bp | 1206440 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639775733 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_922340 |
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| Protein GI | 119715375 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0306516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGGA AGGGTGCGGC GCTCGGTGAG CCGCTGGTAC CACTCGCCTC GAGGACGGAC
GGTCTCCTGG CCAGTCCGCC GCCGTCCGGG GGAATGATGC GCGAGATCGA CCAGGGCCAG
CTGTTGGCGA GCATCGCCGC GACCTCCCAC GACTGCATCC TCTCCCTCGA CTCCGACGCC
AGGATCCGGT GGGCGAGCCC GGCGACCGAG CAGGTCCTCG GCTGGCGCCC CGACGACCTG
GCCGGCTGCG AGCTCGGCGT GTTGTTCCCC CGCGACGGCA GCGAGCTGCG CGACGCCACG
GTCGCCCGGC TGCTCACCGG CGAGCAGGTC GAGCCGTTCA TCGACGCCGG CGTCCGTCGC
GACGGCTCCT CGTTCAAGGC GCAGGTCACC CTCGGCCCGG TACACGGCCC CGGGGACGAG
ATCACCGGGG TGATCCTGAT CCTGCGCGAC GTGACCGCCC AGCTGCACGA GCAGCGCGAG
CTGGCGCTCG CCCTCGAGAT GTCCCGCGCA CACTTCGACC AGGCGACCAC GGCGCAGGCG
ATCCTCGACC TGAGCGGCCG CCTCGAGTCG GTCAACCCCG CATGGTGCGA CCTGTTCGGC
CACGGCGAGG GCTGGTTCGC CGACTGCGCG ATCATCGGCC TGGTCCACCC GCTCGACGCC
GAGGACGTGC TGGCCCGGAT CGCCCGGCTG CGGGCCGGTG AGATCGACTC GATCAGCTAC
CGCGGGCTGT TCCGCGACGC CGAGGGCGGC GACCTGCGGC TCCGGCTCGA CGCGGCCCTG
CTCCGCGAGC CCGGTGGCCG GCCGTACGCG ATCGCGGCCT CGGTCGGCGA CCCCGACGAC
CTCGACGGCC CCGGCGACCT CGAGGGCGGG GCGGGCGCGG TCGGTACGGC GGACGGGTCG
GCGAGCGACC CCCAGGAGGC CCGCGGGCTT CGCGCCGAGG CCCTGGCCCG GCGGGCCTGG
GACGCCGCGG TGGTCATGGA CCGTCGGCTG CAGATCGTCT TCGTCGCCGG GGCGCTGGCG
CGGCTGCTGC GCTACCGCCC CGACGAGCTG CTGCACCGCC GCGGCTCGGA CTACGTCCAC
CCCGCCGACG CCCCCACCGT GTCCGGGATG CTGGGCCGGC TGCTGGCCGA GCCGCGCAGC
GCCGAGCACG CGGTGCTGCG GGTCCACGAC GGCGAGCAGC GGTGGCGCTG GGTGGAGGTG
ACCGCCACCA ACTGTCTCGA CGACCCCGAG ATCGGGGGCA TCGTCGCCAA CGTCCGCGAC
GTCACCGAAC GGGTCCGCAC CGAGGAGGCG CTGAAGCTCT CCGAGGCGCT GCACCGGGCG
ATGGTCGAGA CCGCCCAGGA AGGCATCATG GCCACCTCGC CCGAAGGCAA GGTGATGTTC
GCCAACGAGA CCGCCGCGGT GATCGTCGGC CGCCCGGTCG ACGAGATGTA CGGCGCGGAC
CCGCGGCGGC TGTTCGGGCT GCCGGACGCG GACTCCGACG ACGAGGTCGC CACCCACGAG
GTCGTCCACC TGCGCCCCGA CGGCAGCGAG CGGATCCTGG AGATCTCGCT GCGTCCGCTC
AACAGCCGCG ACGGCCGGCT CGGCTCGTTG GTCTCGATCT ACGACGTCAC CGACGCCCGG
CACGCGGAGC GGGCGCTGCG CCGTCGAGCC CTGCACGACT CGCTGACCTC GCTGCCGAAC
CGCTACCTGT TCCTCGACCG GCTCGAGACC GCGGCCGCCC GGCAGCGCCG CTTCGAGGGC
CGGGGGACCG CCGTGCTGTT CCTCGACCTC GATGGGTTCA AGCAGGTCAA CGACGGCTTC
GGCCACGAGG CCGGGGACGC GGTCCTGCGG GAGGTGGCGG CGCGGCTGCT GGCCTCGGTG
CGCGGGACGG ACACGGTCGG CCGCCTGGGC GGCGACGAGT TCGCGGTGAT CTGCGAGGAC
ACCGGCAGCG AGGAGGCGCT CGTGGTCGCC CAGCGCATCC TCGACGCCCT GCACGACCCG
ATCCGGGTCG GCGACCACGA CCACCCGATC GGGCTGAGCA TCGGGGTGGC GCTGGCACCG
CCGTACGACT TCGACGAGCT GGTCCGCCGG GCCGACGAGG CGATGTACCG GGCCAAGCAC
GTCGGCGGCA GCCGGATCGC GGTGGCCGGT CAGGACGACG GCGAGGGGCC GGTGCCCACG
GAGTAG
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| Protein sequence | MTGKGAALGE PLVPLASRTD GLLASPPPSG GMMREIDQGQ LLASIAATSH DCILSLDSDA
RIRWASPATE QVLGWRPDDL AGCELGVLFP RDGSELRDAT VARLLTGEQV EPFIDAGVRR
DGSSFKAQVT LGPVHGPGDE ITGVILILRD VTAQLHEQRE LALALEMSRA HFDQATTAQA
ILDLSGRLES VNPAWCDLFG HGEGWFADCA IIGLVHPLDA EDVLARIARL RAGEIDSISY
RGLFRDAEGG DLRLRLDAAL LREPGGRPYA IAASVGDPDD LDGPGDLEGG AGAVGTADGS
ASDPQEARGL RAEALARRAW DAAVVMDRRL QIVFVAGALA RLLRYRPDEL LHRRGSDYVH
PADAPTVSGM LGRLLAEPRS AEHAVLRVHD GEQRWRWVEV TATNCLDDPE IGGIVANVRD
VTERVRTEEA LKLSEALHRA MVETAQEGIM ATSPEGKVMF ANETAAVIVG RPVDEMYGAD
PRRLFGLPDA DSDDEVATHE VVHLRPDGSE RILEISLRPL NSRDGRLGSL VSIYDVTDAR
HAERALRRRA LHDSLTSLPN RYLFLDRLET AAARQRRFEG RGTAVLFLDL DGFKQVNDGF
GHEAGDAVLR EVAARLLASV RGTDTVGRLG GDEFAVICED TGSEEALVVA QRILDALHDP
IRVGDHDHPI GLSIGVALAP PYDFDELVRR ADEAMYRAKH VGGSRIAVAG QDDGEGPVPT
E
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