| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0711 |
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| Symbol | rpoB |
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| ID | 4599815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 749765 |
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| End bp | 753265 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639775312 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_921923 |
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| Protein GI | 119714958 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATCG AAGAGCGAAT CGTCGAAGGA CACCTCTTGG CCGCGCGCAC CACCCCCGGT
AACACCCGCC GCATCTCTTT CGCAAAGATC ACCGAACCTC TCGAGGTCCC GCAGCTCCTC
TCCCTCCAGA CCGACAGCTT CGACTGGCTG GTCGGCAACG ACAAGTGGAA CGCCGCCGTC
GAGCGCCGCC GTTCCGAGGG TGAGGACGTC TCCAGCAAGT CCGGTCTCCA GGAGATCTTC
GAGGAGATCT CCCCGATCGA GGACTTCTCC GAGACGATGT CGCTGTCGTT CGAGAACCCG
GTCTTCTACG ACCCCAAGTA CACCGTCGAC GAGTGCAAGG AGAAGGACTT CACCTACTCC
GCGCCGCTCT ACGTCTCGGC GGAGTTCACC AACAACGACA CCGGTGAGAT CAAGGGCCAG
ACGGTCTTCA TGGGCGACTT CCCCCTGATG ACCGACAAGG GCACCTTCAT CATCAACGGC
ACCGAGCGGG TCGTCGTCTC GCAGCTCGTC CGCTCGCCGG GCGTCTACTT CGAGCGCACC
GCCGACAAGA CGTCCGACAA GGACATCTAC ACCGCCAAGC TGATCCCGTC GCGGGGCGCC
TGGCTCGAGT TCGAGATCGA CAAGCGCGAC ATGGTCGGCG TCCGCCTCGA CCGCAAGCGC
AAGCAGAACG TCACGGTGCT GCTCAAGGCC CTCGGCTGGA CGAACGAGCA GATCCGCGAG
GAGTTCGGCG AGTACGAGTC GATGATGCTG ACCCTGGAGA AGGACCACAC CCAGGGCCAG
GACGACGCGC TGCTCGACAT CTACCGCAAG CTGCGCCCGG GCGAGCCGCC GACGCGGGAG
GCCGCGCAGA CGCTGCTGAA CAACTACTAC TTCAACCCGA AGCGCTACGA CCTCGCCAAG
GTCGGCCGCT ACAAGATCAA CAAGAAGCTC GGCCTCCTCG AGGCGTTCGA CCAGCAGACG
CTGACGATCG ACGACGTGGT CGCCGCGATC AAGTACATCG TCGCGCTGCA CGACGGCCGC
GAGCAGATCG AGGCGCCGCA GGGCACCCTC GACATCTCGG CCGACGACAT CGACCACTTC
GGCAACCGCC GGATGCGCAC GGTCGGCGAG CTGATCCAGA ACCAGCTCCG CACCGGCCTG
GCCCGCATGG AGCGCGTGGT CCGCGAGCGG ATGACGACCC AGGACGTCGA GGCGATCACG
CCGCAGTCCC TGATCAACAT CCGTCCGGTG GTGGCGGCGC TGAAGGAGTT CTTCGGCACC
TCCCAGCTCT CGCAGTTCAT GGACCAGACC AACCCGATCG CCGGCCTGAC GCACAAGCGC
CGGCTCTCGG CGCTCGGTCC CGGTGGTCTG TCCCGCGACC GCGCCGGCAT GGAGGTCCGT
GACGTCCACC CGTCGCACTA CGGCCGGATG TGCCCGATCG AGACGCCGGA AGGCCCGAAC
ATCGGCCTGA TCGGCTCGCT CGCCTCGTAC GGCCGGATCA ACCCGTTCGG GTTCGTCGAG
ACGCCGTACC GCAAGGTCAC GAAGGGCAAG GTCACCGACC AGATCGACTA CCTCACCGCC
GACGACGAGG ACCGCTACGT CATCGCGCAG GCGAACGCCG CGCTCGACGA CAAGAGCCGC
TTCGTCGAGG AGCGTGTGCT GGTCCGCCAG CGCGACGGCG AGGTCTCCGA GGTGCTCGCC
GACGAGGTCG ACTACATGGA CGTCTCGCCG CGCCAGATGG TGTCGGTCGC GACCGCGCTG
ATCCCGTTCC TCGAGCACGA CGACGCCAAC CGCGCGCTCA TGGGCGCCAA CATGCAGCGC
CAGGCGGTGC CGCTCATCAA GAGCGACTCG CCGCTGGTCG GCACCGGCAT CGAGTACCGC
GCCGCGGTCG ACGCCGGCGA CGTGGTCGTG GCGACCGCGG CGGGCGTGGT CAAGGAGGTG
TCCGCGGACG TCATCGAGAC GATGAACGAC GACGGCACCT ACTCGACGTA CCGCCTGGCC
AAGTTCAAGC GCTCCAACCA GGGCACCTGC ATCAACCAGC GTCCGCTGGT CAGTGAGGGC
GACCGGCTCG AGATCGGCAC CCCGATCGCG GACGGTCCCT GCACCGACGA GGCCGAGATG
GCGCTCGGCA CCAACCTCCT CGTGGCGTTC ATGCCGTGGC AGGGCCACAA CTACGAGGAC
GCCATCATCT TGAGCCAGCG CCTGGTCCAG GAGGACATCC TCACCTCGAT CCACATCGAG
GAGCACGAGG TCGACGCGCG GGACACCAAG CTCGGCCCCG AGGAGATCAC CCGGGACATC
CCGAACGTCT CCGAGGAGAT GCTCGCCGAC CTCGACGAGC GCGGCATCAT CCGGATCGGC
GCGGAGGTCA CCACCGGTGA CGTCCTCGTC GGCAAGGTGA CCCCCAAGGG CGAGACCGAG
CTGACCCCCG AGGAGCGCCT GCTGCGTGCG ATCTTCGGTG AGAAGGCGCG CGAGGTGCGC
GACACCTCGA TGAAGGTCCC GCACGGCGAG TCCGGGACCG TCATCGGCGT CCGGGTCTTC
GACCGTGAGG ACGGCGACGA GCTGCCCCCG GGCGTCAACC AGCTGGTCCG GGTCTACGTC
GCCCAGAAGC GCAAGATCTC GGTCGGTGAC AAGCTCGCGG GCCGGCACGG CAACAAGGGC
GTCATCGCGA AGATCCTGCC GATCGAGGAC ATGCCGTTCA TGGAGGACGG CACGCCGGTC
GACGTCGTGC TCAACCCGCT GGGTGTGCCG CGACGGATGA ACATCGGGCA GATCCTCGAG
CTGCACCTGG GCTGGCTGGC CAAGCAGGGT TGGGACCTCA ACCTGAACGA CGACAAGTCC
GGTGCCGACT GGAAGCAGCG CCTGATCAAG ATCCACGCCG ACAAGGCGGA GCCCGGCACG
AAGGTCGCCA CCCCGGTCTT CGACGGTGCC CGCGAGGACG AGATCACCGG GCTGCTCGGC
TCGACGATCC CCAACCGCGA CGGCGTGCGG ATGATCGACA ACACCGGCAA GGCGAGCCTG
TTCGACGGCC GCTCGGGCGA GCCGTTCCCG GAGCCCGTCG CGGTCGGCTA CATGTACATC
CTCAAGCTGC ACCACCTCGT GGACGACAAG ATCCACGCGC GCAGCACCGG CCCCTACTCG
ATGATCACGC AGCAGCCGCT GGGCGGTAAG GCCCAGTTCG GTGGCCAGCG GTTCGGCGAG
ATGGAGGTCT GGGCCATGGA GGCGTACGGC GCCGCCTACG CCCTGCAGGA GCTGCTCACG
ATCAAGTCGG ACGACGTGCC CGGTCGCGTC AAGGTCTACG AGGCCATCGT GAAGGGCGAG
AACATCCCCG ACTCCGGCAT CCCGGAGTCG TTCAAGGTGC TCGTCAAGGA GATGCAGTCG
CTCTGCCTCA ACGTGGAGGT GCTGTCCCAG GACGGCACGG CTATCGAGAT GCGCGACGCG
GAGGAGGACG TCTTCCGCGC CGCCGAGGAG CTCGGCATCG ACCTGTCCCG TCGCGAGCCC
AGCTCGGTCG AAGAGGTGTG A
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| Protein sequence | MQIEERIVEG HLLAARTTPG NTRRISFAKI TEPLEVPQLL SLQTDSFDWL VGNDKWNAAV
ERRRSEGEDV SSKSGLQEIF EEISPIEDFS ETMSLSFENP VFYDPKYTVD ECKEKDFTYS
APLYVSAEFT NNDTGEIKGQ TVFMGDFPLM TDKGTFIING TERVVVSQLV RSPGVYFERT
ADKTSDKDIY TAKLIPSRGA WLEFEIDKRD MVGVRLDRKR KQNVTVLLKA LGWTNEQIRE
EFGEYESMML TLEKDHTQGQ DDALLDIYRK LRPGEPPTRE AAQTLLNNYY FNPKRYDLAK
VGRYKINKKL GLLEAFDQQT LTIDDVVAAI KYIVALHDGR EQIEAPQGTL DISADDIDHF
GNRRMRTVGE LIQNQLRTGL ARMERVVRER MTTQDVEAIT PQSLINIRPV VAALKEFFGT
SQLSQFMDQT NPIAGLTHKR RLSALGPGGL SRDRAGMEVR DVHPSHYGRM CPIETPEGPN
IGLIGSLASY GRINPFGFVE TPYRKVTKGK VTDQIDYLTA DDEDRYVIAQ ANAALDDKSR
FVEERVLVRQ RDGEVSEVLA DEVDYMDVSP RQMVSVATAL IPFLEHDDAN RALMGANMQR
QAVPLIKSDS PLVGTGIEYR AAVDAGDVVV ATAAGVVKEV SADVIETMND DGTYSTYRLA
KFKRSNQGTC INQRPLVSEG DRLEIGTPIA DGPCTDEAEM ALGTNLLVAF MPWQGHNYED
AIILSQRLVQ EDILTSIHIE EHEVDARDTK LGPEEITRDI PNVSEEMLAD LDERGIIRIG
AEVTTGDVLV GKVTPKGETE LTPEERLLRA IFGEKAREVR DTSMKVPHGE SGTVIGVRVF
DREDGDELPP GVNQLVRVYV AQKRKISVGD KLAGRHGNKG VIAKILPIED MPFMEDGTPV
DVVLNPLGVP RRMNIGQILE LHLGWLAKQG WDLNLNDDKS GADWKQRLIK IHADKAEPGT
KVATPVFDGA REDEITGLLG STIPNRDGVR MIDNTGKASL FDGRSGEPFP EPVAVGYMYI
LKLHHLVDDK IHARSTGPYS MITQQPLGGK AQFGGQRFGE MEVWAMEAYG AAYALQELLT
IKSDDVPGRV KVYEAIVKGE NIPDSGIPES FKVLVKEMQS LCLNVEVLSQ DGTAIEMRDA
EEDVFRAAEE LGIDLSRREP SSVEEV
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