| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0404 |
|---|
| Symbol | |
|---|
| ID | 4597716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | + |
|---|
| Start bp | 434682 |
|---|
| End bp | 435788 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639775019 |
|---|
| Product | putative sugar ABC transporter, substrate-binding protein |
|---|
| Protein accession | YP_921634 |
|---|
| Protein GI | 119714669 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATGA ACAAACTCAT CGTGGCCGGT GTCGCCGCGG TGTCTGCCTT GAGCCTCGCT
GCCTGTAGCC AGGGAAGCGG CGCCACCACT GCGGAGCCGA AGGCCCAGGA CTCCGCCTCC
GTGCAGGCGG CGAGCGGGGA CGCACCTGCG CCGTTCGACC AGGCCGGGGT CCGCGTGGCC
ATCGTGCAGA ACAGCGGCCA GGGTGACTAC TTCCAGCAGT ACCTGAACGG CACGAAGCAG
CAGGCGGCAG CGCTCGGGAT CGACCTGAGC GTGTACGACG CCCAGGGCGA CAACGCCACG
CAGGCGACCC AGCTCGATCA GGCCATCTCA TCCGGCGTGC AGGGCATCAT CGTGCGCCAC
GGCTTCCCCG ACACGCTCTG CCCGGGCGTC AACAAGGCGA TCGACCAGGG CATCAAGGTC
GTCATCTACG ACGTCGAGAT CCAGAAGTGC GCGCCGCAGG CCGTGCAGAC CCAGCAGTCC
GACAACAAGA TGGCGAGCCT CGTGCTGGAC AAGATGGCCG AGGACATCGG CACCGGCAAG
CCGGTCGGCT ACGTCAACGT CGCCGGTATC GCGCCGCTGG ACCGCCGGGA CCTCGTGTGG
CAGGACTACC TGGCCACGAA CGACTGGACC CAGAAGTTCA AGACCGGCAA GTTCACGAAC
TCCACGGCCA CGGACACCGC GCCGATGGTG GACAGCGTCT TGAAGTCCAA CCCGGACGTG
GTCGCCGTCT ACGCGCCGTA CGACGAGCTC ACCAAGGCGA CCCTCTCCGC GCTGAAGCAG
AATCCGAGCC TGCAGGGCAA GGTCAAGGTC TACGGCGCCG ACATCTCCAC GGCCGACATC
GAGCTCATGA CCAACCCGGA CAGCCCGTGG GTGGCGACCG GCGCGACGGA CCCCAACGCC
ATCGGTGCTG CGGTGGTCCG CACGCTCGCA CTCCACATGG CCGGCGAGCT GGACGGGCTC
AACGTCGAGT TCCCGCCGAT CCTGGTCACG CAGGACTTCC TGCGGTCGGA GGGGATCAAG
AACATGGATG ATCTGCGTGC AGCGGAGCCG GCGCTGAACA TCGCCGACGT GTCGTCCGCC
GACTGGATCC CGGCCGTCAC GTTCTGA
|
|---|
| Protein sequence | MRMNKLIVAG VAAVSALSLA ACSQGSGATT AEPKAQDSAS VQAASGDAPA PFDQAGVRVA
IVQNSGQGDY FQQYLNGTKQ QAAALGIDLS VYDAQGDNAT QATQLDQAIS SGVQGIIVRH
GFPDTLCPGV NKAIDQGIKV VIYDVEIQKC APQAVQTQQS DNKMASLVLD KMAEDIGTGK
PVGYVNVAGI APLDRRDLVW QDYLATNDWT QKFKTGKFTN STATDTAPMV DSVLKSNPDV
VAVYAPYDEL TKATLSALKQ NPSLQGKVKV YGADISTADI ELMTNPDSPW VATGATDPNA
IGAAVVRTLA LHMAGELDGL NVEFPPILVT QDFLRSEGIK NMDDLRAAEP ALNIADVSSA
DWIPAVTF
|
|---|
| |