| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0252 |
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| Symbol | |
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| ID | 4596136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nocardioides sp. JS614 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008699 |
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| Strand | + |
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| Start bp | 266872 |
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| End bp | 270207 |
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| Gene Length | 3336 bp |
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| Protein Length | 1111 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 639774865 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_921484 |
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| Protein GI | 119714519 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.103947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACGCTG TGCGCCCCTT CGCCATCACC GACCCGCTGC CGGCCGGCAC CGTGCTGCTC
GAGGCGAGCG CCGGCACCGG CAAGACCTGG ACCATCGGCG CCCTCCTCAC GCGGTACGTC
GCCGAAGGAG TCGCCCGGCT CGACCAGCTG CTCGTCGTGA CGTTCGGCCG CGCGGCCAGC
CAGGAACTGC GCGAGCGGGT GCGCGCGCAG CTGGTCGAGG CCGAGCGGGT GCTGGGCGAC
GACCCGGTGG CCGGCGACTC CGGTGACCCC GGTGACCCCG GTGACCCCGG TGACTCCGAA
CTCGTGACGC TGCTGCGCTC GTGGGGCGCC GACGAGCGGC GCCGCGGCCA CCGCCGGGTC
ACCGAGGCGC TCGCCGGCTT CGACGCGGCA ACCATCGCGA CCACCCACCA GTTCTGCTCG
ATGGTGCTCG ACTCCCTCGG CGTCGCAGGC GACACCGACT CCCGGGCGCG GCTGGTCGAG
GACCTCGACG ACCTGGTCAA GGAGACCGTC GACGACCTCT ACCTCCGCGC GTTCGCCGAC
GCCGAGCCGG CGTTCACCCA CGACGAGGCG ATGGCCATCG CCCGGGCGGC GGTCGGCGAC
CCGCAGGCCC GCCTCGAACC CGCCGGCGCG GACCGCTCGA CGATCGCGGG CCGCAAGGTG
AGCTTCGCCG ACGCCGTACG CACCGAGCTC GACCGCCGCA AGCGCCGGCT CGGCATCCTC
TCCTACGACG ACCTGCTCTC CCAGCTCGCC GACGCGCTCG CCCAGCCGGG GAGCGCCGCG
GCCCAGCGGA TGCGGGCGCG CTGGCGGATC GTGCTGGTCG ACGAGTTCCA AGACACCGAC
CCGGTGCAGT GGGAGGTCCT CGACCGGGCC TTCAGCGGCC ACGCCACGAT GGTCCTGATC
GGCGATCCGA AGCAGGCGAT CTACGCGTTC CGCGGGGGCG ACGTCACCAC CTACCTGCGG
GCCGCCGAGA CCGCGCAGAC CCGGCAGACG CTCGCGGTCA ACCGACGCAG CGACGGCCCG
CTGCTCGCCG CCGTCCAGAC GCTCCTCGCC GGCGCGGAGC TCGGCGACGA GCGGATCGTC
GTGCACGACG TGACCGCGCA CCACGGCGAG TCCCGCCTCG CCGGTGCTCC GGTCCCGCAT
CCGTTCCGGC TGCGGGTGGT GCGCCGCGAC ACGTTCGGGC GCCGTGGGGG CAGCACGCTC
ACGGTCGGTC AGGTCCGCCC GCATGTCGCG AGAGACCTGG CGCTCGACGT ACGCCGGCTG
CTCGCGTCGG GCGCGACCTG GTGCGGGGAG CCGATCCGGC CGCGGGACGT CGCGGTGATC
AGCTACCGCC ACGCCGACCT CGCCACCGTC CGCGAGGCGC TGCTCGAGGT CGGGGTGCCG
GCGGTGATCG CCGGCGGCGG CAGCGTGTTC GCGACCCCCG CGGCGATCGA GTGGCTCACG
CTGCTGGAGG CGCTCGAGCA GCCGCACCGC AGCACCCGCG TGCGCTCGGC CGCGCTGACC
TGCTTCTTCG GGCACACCGC CGTCGAGCTC GACGCCCGCG GGGACGACCT GACCGACGAG
GTCGCCGACA CGCTGCGCGG CTGGGTCGAG CTCTTCGCCG GCCGCGGCCT CGCCGCGGTG
CTCGAGGCCG CGAACGTCGC GGGCCTGCCG GAGCGGGTGC TCGCGGAGAT CGGCGGGGAC
CGGCGGCTGA CCGACCTGCG CCACATCGGC GAGGCGCTGC ACGAGGTCAC CCTCGTCGCG
CGGCACGGGC TGCCCTCGCT GCTCACCTGG CTGCGGGGGC AGGTCACCGA GGGCCGCGCG
GGCCGCGGCG TCGAACGGAC CCGCCGGCTC GACTCCGACG CGGCCGCCGT CCAGCTCGTC
ACCATCCACG CCAGCAAGGG GTTGGAGTAC CCCGTCGTCT ACGTTCCCGC CCTCGCCGAC
CGCTTCGTCC CGAAGCCGAC CCGACCGCTG TTCCACGACG ACGGCGGCAC GCGCTGCCTC
GACGTCGGCG GCGCGCGCTC GGACGACGGC TGGGCCGACC ACTGCCGGCG CTGGGCCGAC
GAGGAAGCGG GCGAGTGGCT GCGGCTGCTC TACGTCGCGA CCACCCGGGC CAAGTCGCAG
GTGGTCGCCT GGTGGGCGCC GACCAAGAAC GCCGTCGCCT CGCCGCTGCA CCGGATGCTG
ATGCGCGACG GCGACGGGCC TGACGGTGAG ATGTCGGCGA GCGTGCCCGC CGCGCCGGCC
GTGCCGGACG ACGACGCCGT GGTCACGCTG TTCTCGCGGT GGCGCGAACG TGGCGGGCCG
AGCCCCGAAG CCGCGATCCA CGCCGACCCG GGCGCGGACC CGCCACGGCC GGCGACCCCC
GACCTCGCGG CGCGGACGTT CACCCGCACC ATCGACACCG AGTGGCGGCG CGCGTCGTAC
TCCTCCCTCA GCAGGGTGGA GGTGGCCGCG CCGGCCGGCG CGGTGGTGAG CGAGCCGGAG
ATCACCGGCA AGGAGGACGA AGCGCTCGCT CCCGAGGCCG TCCCCGTGGC GCCGCTGCTC
GCCAGCGACG TGCCGTCGCC GATGGCGGGG CTGCCGGTGG GCGCGACCTT CGGGTCGCTC
GTGCACGCGG TGCTGGAGCA CACCGACCCG GAGGCTGTCG ACCTGCGTGC CGAGCTGCTC
GGCCACATCG ACGAGCAGCT CGGCTGGTGG CCGGTCGATC TCGACCGTGA GGAGCTGGCC
GACGCGCTGG TGGCGGTCTG CGACTCCCCG CTGGGCCCGC TCGCCGCCGG CACCACGCTG
CGGCAGGTCA CTCTCGGCGA CCGGCTGCGC GAGATGGAGT TCGAGCTCCC GCTCGGCGAC
GGCCTGCTCG GCGACCTCCG CCCGCTGCTG GAGCGGCACC TGCCGCCCGG TGACCCGGTC
CGCGCGTACA CCGCCCATCT CGACGGCCCG CTCGGCGAGC AGACCCTGCG CGGCTACCTC
ACCGGCTCCG TCGACGTCGT GCTCCGGCTG CGCTCGGAGG CGGGGCCGCG CTACCTGGTC
GTCGACTACA AGACCAACTG GCTCGGACCC ACCGACGAGC CGCTCACCGC GCACAGCTAC
GCGTCGGTCG CGCTCGACGC CGCGATGGGC CACTCCGACT ACCCCCTGCA GGCGCTGCTG
TACGTCGCCG TCCTGCACCG GTTCCTCCGC TGGCGCCAGC CCGGGTACGA CCCCGAGCAG
CACCTCGGCG GCGTCCTCTA CCTCTACCTG CGCGGCATGT GCGGGCCGGA CACGCCATCG
GTCGACGGCG CGCCCTGCGG TGTGTTCGCG TGGCGGCCAC CGGTCGCCCT GGTCGAGGAG
CTCTCCGACC TGCTGGACGG CGGTGCCCGT GACTGA
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| Protein sequence | MNAVRPFAIT DPLPAGTVLL EASAGTGKTW TIGALLTRYV AEGVARLDQL LVVTFGRAAS
QELRERVRAQ LVEAERVLGD DPVAGDSGDP GDPGDPGDSE LVTLLRSWGA DERRRGHRRV
TEALAGFDAA TIATTHQFCS MVLDSLGVAG DTDSRARLVE DLDDLVKETV DDLYLRAFAD
AEPAFTHDEA MAIARAAVGD PQARLEPAGA DRSTIAGRKV SFADAVRTEL DRRKRRLGIL
SYDDLLSQLA DALAQPGSAA AQRMRARWRI VLVDEFQDTD PVQWEVLDRA FSGHATMVLI
GDPKQAIYAF RGGDVTTYLR AAETAQTRQT LAVNRRSDGP LLAAVQTLLA GAELGDERIV
VHDVTAHHGE SRLAGAPVPH PFRLRVVRRD TFGRRGGSTL TVGQVRPHVA RDLALDVRRL
LASGATWCGE PIRPRDVAVI SYRHADLATV REALLEVGVP AVIAGGGSVF ATPAAIEWLT
LLEALEQPHR STRVRSAALT CFFGHTAVEL DARGDDLTDE VADTLRGWVE LFAGRGLAAV
LEAANVAGLP ERVLAEIGGD RRLTDLRHIG EALHEVTLVA RHGLPSLLTW LRGQVTEGRA
GRGVERTRRL DSDAAAVQLV TIHASKGLEY PVVYVPALAD RFVPKPTRPL FHDDGGTRCL
DVGGARSDDG WADHCRRWAD EEAGEWLRLL YVATTRAKSQ VVAWWAPTKN AVASPLHRML
MRDGDGPDGE MSASVPAAPA VPDDDAVVTL FSRWRERGGP SPEAAIHADP GADPPRPATP
DLAARTFTRT IDTEWRRASY SSLSRVEVAA PAGAVVSEPE ITGKEDEALA PEAVPVAPLL
ASDVPSPMAG LPVGATFGSL VHAVLEHTDP EAVDLRAELL GHIDEQLGWW PVDLDREELA
DALVAVCDSP LGPLAAGTTL RQVTLGDRLR EMEFELPLGD GLLGDLRPLL ERHLPPGDPV
RAYTAHLDGP LGEQTLRGYL TGSVDVVLRL RSEAGPRYLV VDYKTNWLGP TDEPLTAHSY
ASVALDAAMG HSDYPLQALL YVAVLHRFLR WRQPGYDPEQ HLGGVLYLYL RGMCGPDTPS
VDGAPCGVFA WRPPVALVEE LSDLLDGGAR D
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