| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_0087 |
|---|
| Symbol | |
|---|
| ID | 4600060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 98382 |
|---|
| End bp | 99533 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639774698 |
|---|
| Product | CdaR family transcriptional regulator |
|---|
| Protein accession | YP_921320 |
|---|
| Protein GI | 119714355 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.39788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGC TCGACGACCT GGTCAACGAC CTCGCTGCCG CCATGGGCGC GCCCTGCATC
CTCGAGGACC CGGGCTTCCG GCTGCTCGCC TTCTCCGACC ACCGCGACGT CGACCCGGTC
CGACAGCGCT CGATCCTCGA GCGACGCTCG ACCGAGGAGG TGAGGGACTG GTTCTACGCG
CACGGCATAG CGGAGTCCGA CCAGCCCCTG CGGACGCCGG CGGAGCCCGG CCTCGGCATC
ATGTCCCGGC TGTGCGTGCC GGTGCGCCAC CTGGGCCGGC TGCAGGGGTT CTTCTGGCTT
CTGGACCCCA GCGGCGACAT CGACGCGACA CGGTGGGCCG AGACACAGCC GTTCGCCGAC
GCGGCCGGGG CCCTGTTGAG CCTCGCCGAA CGGCGCCAGG CCCACCGTGA CGCTCTCTAT
CGCGAGGTCG TCGAGGGCGG CCACCGCGCC TCGCGACCGG CCGCCGTCGA GCTCGCCGCG
GCCGCGGGCC TGCGCATGGA TCAGCCCGTG CGGCTCGCCG TCGTGGAACG TCCCGACCTC
GCCACTCAGC TGCCGAGCCG GCCGAGCCGC AGCGGCCTGC TGTGGGTTCG CGAGGCCGCG
GGCTCCTGCG CGGCGATCCT CCGTGCGGAC CAGGCCCGGA GCCTGCCCAC CGATCTCGCG
GCCGTGCTCG GGGCACTGGG ACTCGCCCGG CGGGTGCCCG AGCTGGACGA CCGGACACTG
GTCGGCATCG GGCCCGCCGT CGCCAGCCTG GACCACCTCG CGGAGGCCCG CTCGGGCGCA
CTGGTGGCGC TGCGGGTGGG ACGGCATCGC AGCGACCCGG TCACGTGCTG GGACGGGCTC
GGCCCCCTCG CGCTCCTCGG CATCGCACGC GACGCCGACC TGGCCCGCTC GCTCGTCGCG
CCCGGCCTGC GCGCCTTCCT CGAGGAGGGT TCCCCCACGC TCGTGGAGAC GGCGCGCGTC
CACCTGCAGG AGGCGGCCAA CGTCGCGCGC ACGGCATCAC GTCTGGGCGT CCACCGCCAG
ACCGTCTACC ACCGGCTCGA GCAGATCGAG GGCGCGGCCG GCATCGACCT GGCGGACGGT
GACGCGCGTC TCCGCCTGCA CCTGGCCCTC GAGATCGCCC CCTTCGTGCT CCCGTCCCGC
CCGGGGCACT GA
|
|---|
| Protein sequence | MDALDDLVND LAAAMGAPCI LEDPGFRLLA FSDHRDVDPV RQRSILERRS TEEVRDWFYA
HGIAESDQPL RTPAEPGLGI MSRLCVPVRH LGRLQGFFWL LDPSGDIDAT RWAETQPFAD
AAGALLSLAE RRQAHRDALY REVVEGGHRA SRPAAVELAA AAGLRMDQPV RLAVVERPDL
ATQLPSRPSR SGLLWVREAA GSCAAILRAD QARSLPTDLA AVLGALGLAR RVPELDDRTL
VGIGPAVASL DHLAEARSGA LVALRVGRHR SDPVTCWDGL GPLALLGIAR DADLARSLVA
PGLRAFLEEG SPTLVETARV HLQEAANVAR TASRLGVHRQ TVYHRLEQIE GAAGIDLADG
DARLRLHLAL EIAPFVLPSR PGH
|
|---|
| |