Gene Noca_0041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoca_0041 
Symbol 
ID4600092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardioides sp. JS614 
KingdomBacteria 
Replicon accessionNC_008699 
Strand
Start bp46643 
End bp48025 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content67% 
IMG OID639774656 
Productextracellular solute-binding protein 
Protein accessionYP_921278 
Protein GI119714313 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACTAC GGAAGCAGCA CACCAAGGTC TCGGGAGTCA CCAGCGGCGC CTGGTCGTCC 
GCCGCCGCCT CGCCGTTCTC GCGGCGCGGA CTGCTCAAGG CCGGCGGGCT CGCTGCCGGT
GCCGTCGCCG CCGCCCCGCT GCTCTCGGCC TGCGGCCGCG GGTCCGGCAG CGGCTCCTCG
GGCAGCAGCT ACAACATGTG GGTCATGTCG GACACCGTGC CGATCATGAA GCACTTCGTG
GCCAAGTACC GCGAGAGCGA GGACAGCAAG TTCAACGCGA ACATCACCGA GATCCCCTCG
GGCATGTCGC TGCGCGCCAA GATCATCTCC GCCTCGGCTG CCGGCCAGCT GCCCGAGCTG
CTCGACGTCT CGATGAACTA CAGCTCGGAC TTCGCCACCT ACAACCTGTT CGAGCCGCTC
GACTCGCTGA TCTCGTCCGA CCTGGCGTCG AAGTACTCTC TCTACGACCG CGTCTGGAAG
TGGGCCGACA CCGCGAGCAT CCCGGGCTAC GAGGGCGACC AGCAGGTCTT CGGGATCCCC
TACGGTGTCT CCGTGTTCGT CCCGACGTAC CGGGCCGACC TCTTCCGGGA GGCCGGTGTG
GAGTTCCCGA CGACCTGGGA GGAGCTGGTC ACCGTCGGAC AGGCGCTGAC CCAGGCGCCC
CAGCGCTACG CGCTGTCGGT GCCGACCTCG GGCGACCTGA TGGACGAGTT CCACCCCTTC
CTGATGCAGG CCGGCGCCCA GTACGTCAAC GACGACCTCA CCGAAGCCTT CCCGAACCGG
GAGGCCGCCT ACGACGGTTT CGAGTTCTAT CGCGACCTCT CGGCGCGCTA CAAGATCGCG
CCGAAGGAGG CGCCGGACCG CTTCGCCGGC GACCCCGTGC AGCGCCTGAC CTCCGGCCAG
GTGGCGGTGA CGACGCTCTC GGTGCTCAGC GTCAACGCGA TGCGCAACGA GGCAACCGAC
CTCGAGTTCG GCCCCGACAA GGACTGGTAC ATCTCGAAGT TCTGGTCGGG CTCGGGCGGC
CCGGGCGGCT ACTTCAACGC CAACTGCATG CACATCCGCA AGGGCGTCAA GAACGTCGAC
GGTGCCATCG GCTTCATGGA GTGGATGCTC GAGCCGGAGC AGCAGGCGGA GATGTACAAG
TCGTTCAACC GCCCCCCGAT GAACACGACG GTGTGGGACG GCGAGCTGGG CGATGACCCG
GAGTTCCAGA TCTACCGCGA GTCGATCGAG CTCAGCGAGC GCCAGGGCGG GTTCCGCGGG
TGGAAGCTGG CCGAGTTCAC CATCGACCGA GGAGTCGAGC GTGTCGTCAT CGACGGCGAG
GACGTCAAGT CCGTCGTCGA CTCGACCGCG ACCGACATGA TCCAAGCCCT GCAGAACGCC
TGA
 
Protein sequence
MALRKQHTKV SGVTSGAWSS AAASPFSRRG LLKAGGLAAG AVAAAPLLSA CGRGSGSGSS 
GSSYNMWVMS DTVPIMKHFV AKYRESEDSK FNANITEIPS GMSLRAKIIS ASAAGQLPEL
LDVSMNYSSD FATYNLFEPL DSLISSDLAS KYSLYDRVWK WADTASIPGY EGDQQVFGIP
YGVSVFVPTY RADLFREAGV EFPTTWEELV TVGQALTQAP QRYALSVPTS GDLMDEFHPF
LMQAGAQYVN DDLTEAFPNR EAAYDGFEFY RDLSARYKIA PKEAPDRFAG DPVQRLTSGQ
VAVTTLSVLS VNAMRNEATD LEFGPDKDWY ISKFWSGSGG PGGYFNANCM HIRKGVKNVD
GAIGFMEWML EPEQQAEMYK SFNRPPMNTT VWDGELGDDP EFQIYRESIE LSERQGGFRG
WKLAEFTIDR GVERVVIDGE DVKSVVDSTA TDMIQALQNA