| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1806 |
|---|
| Symbol | |
|---|
| ID | 4601799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 1744746 |
|---|
| End bp | 1745816 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639774579 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_921204 |
|---|
| Protein GI | 119720709 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.409792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGGA TAACCCTTAA AGGCGTCACG AAAGTCTACG GCGCGGTAAA AGCCGTCGAC
AACGTGAACC TGGAGATAAA CGACGGCGAG CTATTCACCA TTCTCGGGCC CAGCGGTTGC
GGTAAGACGA CGACCCTCAG GATAATAGCG GGCTTCGAGG TCCCCGACGA GGGGAGAGTG
TACTTCGACG ACGAGGACGT AACGTTCCTC AAGCCGTACA TGAGGGAAAC CGCGATGGTC
TTCCAGAACT ACGCGCTCTG GCCCCACATG ACCGTCTTCG AGAACGTTGC CTACGGTCTG
AGGATAAGGA AGAAGCAGCT AAGGCTGACG GACGAGGAGA TCGAGCGAAG GGTAAAGGAG
GCGTTGAGCC TCGTTAGGCT TGAAGGACTC GAGGACAGGT ACCCGCTCCA GCTAAGCGGC
GGACAACAGC AGAGGGTAGC GCTTGCAAGG GCTTTAGTCG TGCAGCCGAA AGTACTCCTT
CTCGACGAGC CTCTCAGCAA CCTTGACGCG AAGCTGAGGA TAGAGATGAG GGAAGAGATA
AAGCGCATCC AGAAATCGCT CGGAATAACC ACTGTGTACG TCACTCACGA CCAGCTAGAG
GCGATGAGCA TAAGCGACAA GATAGCAGTG ATGGACAAGG GCAGGGTCCT CCAGTACGGA
CACCCGAGGG AGGTCTACTT CAGGCCTACG AACCTCTTCA CGGCGGAGTT CCTTGGCAGG
AGCAACATCT ACAAGGGAGA AGTCGTCGAG AGGGGGGAGG GATACGTGGT GGTGAGAGTA
GAGGAGCTAG GCATTGACGT CAAAGCGGTA CCCGTAGCTG AGAACCTCGT CGGGAAGGTT
GCCGTCGTGG TAAGACCGGA AGTGTTCACC GTTGGGGGGC AGCGGGGAGA GCCAAACACC
GTGAAGGGAA CCGTGGACTT CGTGATGTTC CTTGGCGACA GGACGGAGGT CAGGCTGAAG
GTTGGGAAGG CGTCCCTGAT AGCGTACCTT CCGAACACGT ACTACCCGCA GGTAGGCGAG
GAGCTCGAGC TCTCGGCGCC CTGGAGGAAC GTTATAGCGA TACCCGTCTA A
|
|---|
| Protein sequence | MTRITLKGVT KVYGAVKAVD NVNLEINDGE LFTILGPSGC GKTTTLRIIA GFEVPDEGRV
YFDDEDVTFL KPYMRETAMV FQNYALWPHM TVFENVAYGL RIRKKQLRLT DEEIERRVKE
ALSLVRLEGL EDRYPLQLSG GQQQRVALAR ALVVQPKVLL LDEPLSNLDA KLRIEMREEI
KRIQKSLGIT TVYVTHDQLE AMSISDKIAV MDKGRVLQYG HPREVYFRPT NLFTAEFLGR
SNIYKGEVVE RGEGYVVVRV EELGIDVKAV PVAENLVGKV AVVVRPEVFT VGGQRGEPNT
VKGTVDFVMF LGDRTEVRLK VGKASLIAYL PNTYYPQVGE ELELSAPWRN VIAIPV
|
|---|
| |